Last data update: 24 January 2024 16:39 CET
Plasmid name: pDG2i-eGFP-V5 puro (LMBP 7947)
| New search | Print data sheet |
| Price category: | Cat. 3 (cf. price list) |
| Status: | GeneCorner core plasmid |
| GeneCorner sequence: |
p7947.gb
(View with Genome Compiler) p7947.txt p7947.pdf |
| Sequence analysis results Genecorner: |
Sanger: 127479.fasta Sanger: 127480.fasta NGS: d04-gc-dec2018.fasta |
| Cloned DNA: |
B gene of the control of cell death locus of the Escherichia coli F plasmid (ccdB, lethal gene) Reverse tetracycline-responsive transcriptional activator (rtTA); variant 3 (rtTA3) Aequorea victoria green fluorescent protein DNA (GFP); enhanced red-shifted variant (EGFP), C-terminal V5 epitope; C-terminal |
| Promoter: | Human cytomegalovirus immediate early promoter (CMV-IE); minimal promoter with tet responsive element (CMVTRE) Rous sarcoma virus/human immunodeficiency virus hybrid long terminal repeat (RSV/HIV-1 5' LTR) Simian virus 40 early promoter (SV40 early) Escherichia coli lac operon promoter Phage T7 gene 10 promoter (T7g10) Phage T3 promoter Escherichia coli lac operon promoter; mutant (lacUV5) |
| Ribosome binding site: |
Internal ribosome entry site (IRES) of the encephalomyocarditis virus (EMCV) polyprotein gene |
| Terminator: | Simian virus 40 polyadenylation signal (SV40 polyA) Rous sarcoma virus/human immunodeficiency virus hybrid long terminal repeat (RSV/HIV-1 3' LTR); modified HIV-1 3' LTR with deleted U3 region (ΔU3/3' LTR) |
| Selection marker: | Ampicillin (amp) Puromycin (puro) Chloramphenicol (cam) |
| Replicon: | Simian virus 40 bidirectional origin (SV40) Escherichia coli plasmid pMB1 origin Phage f1 origin |
| Host range: | Escherichia coli; use a ccdB-resistant strain for propagation Mammalian cells; SV40 permissive cells |
| Parental clone: | pDG1i-eGFP-V5 blast; pTRIPZ |
| Further information: | The construction of this plasmid is described in De Groote et al. (2016). This is a lentiviral Gateway destination vector, with the tet-inducible minimal human CMV-IE promotor and rtTA3 on the same plasmid. The plasmid is suitable for microRNA expression. The U3 region of the HIV-1 3' LTR is deleted (ΔU3 or dU3) and facilitates self-inactivation of the HIV-1 5' LTR after transduction to enhance the biosafety of the vector. The element also contains a polyadenylation signal for transcription termination and polyadenylation of mRNA in transduced cells. The vector contains the psi packaging signal, allowing viral packaging, and the rev response element (RRE) from HIV-1, permitting Rev-dependent nuclear export of unspliced viral mRNA. Depending on the gene cloned in this vector, some leakage expression may be detected. This Gateway destination vector is compatible with the human orfeome library which is also available at BCCM/GeneCorner. This vector can not be used to express short hairpin RNA (shRNA), which requires an RNA-polymerase III promotor. However, this vector can be used for knock-down experiments if the hairpin is expressed in a micro-RNA context (eg. Block-iT PolII miR RNAi kit). Because of the high risk for recombination, this plasmid is only available under the format of isolated plasmid DNA and plasmid integrity should be checked via PvuII restriction digest after each subcultivation. The nucleotide sequence of the pDG2i-eGFP puro vector corresponds with the EMBL Nucleotide Sequence Database accession number LT009443.1. Other names of the plasmid are pDG2lenti_EGFP rtTA3 puro, pDG2iFluo-puro and pDG2i-eGFP-puro. |
| EMBL Accession number: | LT009443.1, view at EMBL, GenBank, DDBJ |
| Latest sequence update: | 17/01/2019 |
| Authenticity test: | Restriction enzyme pattern analysed at GeneCorner: HindIII, NdeI, PvuII and SpeI/XhoI. This plasmid has also been fully sequenced. |
| Class: | Recombinant plasmid |
| Type: | Plasmid |
| History of deposit: | This plasmid was deposited by Dr P. De Groote(1) (2) and Prof. Dr W. Declercq(1) (2). (1) Inflammation Research Center, VIB, Ghent, Belgium (2) Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium |
| Plasmid reference: | De Groote et al., BioTechniques 60 (2016), 252-259 [PMID: 27177818] [DOI: 10.2144/000114417] |
| Related plasmid reference: | PhD thesis Philippe De Groote (2012) |
| Restricted distribution: | - BCCM MTA |
| Distributed as: | plasmid DNA |
| Host for distribution: | Escherichia coli K12xB DB3.1 |
| Host reference: | - |
| Related host reference: | Bernard et al., J. Mol. Biol. 226 (1992), 735-745 [PMID: 1324324] |
| Cultivation medium: | LB-Lennox + ampicillin (100 μg/ml) + chloramphenicol (34 μg/ml)* |
| Cultivation temperature: | 28°C |
| Biosafety level: | L1 in E. coli; L2 in mammalian cells |
| Cultivation remark: | *: selection of transformants on chloramphenicol; subsequent cultivation of a single colony in liquid medium with ampicillin |
| Other culture collection numbers: | - |
Refer in your Materials and Methods: |
pDG2i-eGFP-V5 puro (LMBP 7947) is available at BCCM/GeneCorner. This plasmid was deposited by Dr P. De Groote and Prof. Dr W. Declercq and was published in De Groote et al., 2016. |
Note: Up-to-date, validated data are enclosed with the biological material. Nevertheless, these data are a snapshot at a given moment; further updates are always possible.