GREAT AT SMALL THINGS

LMG strain details

Last data update: 11 June 2014  

  Modify search criteria New search  

Strain Number: LMG 1247   Add to cart
Speciesname: "Pseudomonas syringae pv. syringae van Hall 1902"
Species comment: Authentic Pseudomonas.
Other collections' numbers: ATCC 19310;CCEB 760;CCUG 14279;CNBP 1392;Dye P191;ICMP 3023;ICPB PS255;NCPPB 281;PDDCC 3023;PWP 60
Genome sequenced strain: Genome sequenced strain
Restrictions: Biohazard group 1
Status: Pathovar Reference strain
Biological origin: Syringa vulgaris
Geographic origin: United Kingdom
Isolated by: K.Sabet
Depositor: National Collection of Plant Pathogenic Bacteria (NCPPB) United Kingdom
History: <- before 1967, National Collection of Plant Pathogenic Bacteria (NCPPB) United Kingdom (Pseudomonas syringae) <- 1950, K.Sabet (1950)
Conditions for growth on solid media: Medium 2, 28°C
Properties: Genome sequencing strain
Remarks: Type strain of Pseudomonas syringae and Pseudomonas syringae subsp. syringae
Nucleotide sequences: Pseudomonas syringae pv. syringae strain NCPPB 281 16S ribosomal RNA gene,partial sequence
EMBL Accession number: DQ318866 (NCPPB 281), view at EMBL, GenBank, DDBJ
Length: 1482
Creation date: 2006-03-06

Pseudomonas syringae pv. syringae strain NCPPB 281 60 kDa chaperonin(cpn60) gene, partial cds
EMBL Accession number: AY837544 (NCPPB 281), view at EMBL, GenBank, DDBJ
Length: 555
Creation date: 2004-12-07

Pseudomonas syringae partial rpoB gene for DNA-directed RNA polymerase betachain, strain LMG 1247T
EMBL Accession number: AJ717484 (LMG 1247), view at EMBL, GenBank, DDBJ
Length: 987
Creation date: 2004-09-25

Pseudomonas syringae pv. syringae strain NRRL B-1631 16S-23S ribosomal RNAintergenic spacer, partial sequence
EMBL Accession number: AY342181 (NRRL B-1631), view at EMBL, GenBank, DDBJ
Length: 532
Creation date: 2003-12-02

Pseudomonas syringae strain ATCC 19310 type III secretion system protein(hrcN) gene, partial cds
EMBL Accession number: AY457036 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 251
Creation date: 2003-11-26

Pseudomonas syringae partial 16S rRNA gene, type strain ICMP 3023T
EMBL Accession number: AJ308316 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 1371
Creation date: 2002-01-04

Pseudomonas syringae partial recA gene, strain ICMP 3023
EMBL Accession number: AJ316163 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 598
Creation date: 2002-01-04

Pseudomonas syringae partial carA gene for carbamoylphosphate synthetasesmall subunit
EMBL Accession number: AJ414228 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 624
Creation date: 2002-01-04

Pseudomonas syringae partial atpD gene for atpD beta synthase chain
EMBL Accession number: AJ414249 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 776
Creation date: 2002-01-04

Pseudomonas syringae a41 16S ribosomal RNA gene, partial sequence
EMBL Accession number: AF311988 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 497
Creation date: 2001-08-09

Pseudomonas syringae axB12 16S ribosomal RNA gene, partial sequence
EMBL Accession number: AF311989 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 489
Creation date: 2001-08-09

Pseudomonas syringae gyrB gene for DNA gyrase subunit B, partial cds,strain:PDDCC 3023
EMBL Accession number: AB039428 (PDDCC 3023), view at EMBL, GenBank, DDBJ
Length: 890
Creation date: 2000-11-02

Pseudomonas syringae rpoD gene for DNA-directed RNA polymerase subunit D,partial cds, strain:PDDCC 3023
EMBL Accession number: AB039516 (PDDCC 3023), view at EMBL, GenBank, DDBJ
Length: 807
Creation date: 2000-11-02

Pseudomonas syringae 16S ribosomal RNA gene, partial sequence
EMBL Accession number: AF094749 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 1460
Creation date: 2000-10-05

Pseudomonas syringae pv. syringae ECF sigma factor SigX (sigX) gene,complete cds
EMBL Accession number: AF115335 (LMG 1247), view at EMBL, GenBank, DDBJ
Length: 591
Creation date: 1999-06-03

Pseudomonas syringae LMG 1247 major outer membrane lipoprotein I (oprI)gene, partial cds
EMBL Accession number: AF065955 (LMG 1247), view at EMBL, GenBank, DDBJ
Length: 249
Creation date: 1998-06-11

P.syringae 16S rRNA gene
EMBL Accession number: Z76669 (LMG 1247), view at EMBL, GenBank, DDBJ
Length: 1494
Creation date: 1997-03-25

Pseudomonas syringae pv. syringae tRNA-Ile and tRNA-Ala genes, completesequence
EMBL Accession number: U40717 (CFBP 1392), view at EMBL, GenBank, DDBJ
Length: 560
Creation date: 1996-05-27

Pseudomonas syringae 16S rRNA gene
EMBL Accession number: D84026 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 1454
Creation date: 1996-04-08

Pseudomonas syringae OprF gene
EMBL Accession number: M55408 (ATCC 19310), view at EMBL, GenBank, DDBJ
Length: 1232
Creation date: 1992-05-20

References: Approved Lists of Bacterial Names, Int J Syst Bacteriol, 30, 225-420, 1980 .

Ait Tayeb L, Ageron E, Grimont F, Grimont PA, Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates, Res Microbiol, 156, 763-773, 2005 Jun-Jul [PMID: 15950132] .

Anzai Y, Kudo Y, Oyaizu H, The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera, Int J Syst Bacteriol, 47, 249-251, 1997 Apr [PMID: 9103607] .

Brinkman FS, Schoofs G, Hancock RE, De Mot R, Influence of a putative ECF sigma factor on expression of the major outer membrane protein, OprF, in Pseudomonas aeruginosa and Pseudomonas fluorescens, J Bacteriol, 181, 4746-4754, 1999 Aug [PMID: 10438740] .

Cornelis P, Bouia A, Belarbi A, Guyonvarch A, Kammerer B, Hannaert V, Hubert JC, Cloning and analysis of the gene for the major outer membrane lipoprotein from Pseudomonas aeruginosa, Mol Microbiol, 3, 421-428, 1989 Mar [PMID: 2473376] .

De Vos D, Bouton C, Sarniguet A, De Vos P, Vauterin M, Cornelis P, Sequence diversity of the oprI gene, coding for major outer membrane lipoprotein I, among rRNA group I pseudomonads, J Bacteriol, 180, 6551-6556, 1998 Dec [PMID: 9851998] .

Diard S, Carlier JP, Ageron E, Grimont PA, Langlois V, Guerin P, Bouvet OM, Accumulation of poly(3-hydroxybutyrate) from octanoate in different pseudomonas belonging to the rRNA homology group I, Syst Appl Microbiol, 25, 183-188, 2002 Aug [PMID: 12353870] .

Hilario EM, Buckley TR, Young JM, Improved resolution on the phylogenetic relationships among Pseudomonasby the combined analysis of atpD, carA, recA and 16S rDNA, Antonie Van Leeuwenhoek, 86, 51-64, 2004 [PMID: 15103237] .

Jaspers E, Nauhaus K, Cypionka H, Overmann J, Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton, FEMS Microbiol Ecol, 36, 153-164, 2001 Jul [PMID: 11451519] .

Kong H, Blackwood C, Buyer JS, Gulya TJ Jr, Lydon J, The genetic characterization of Pseudomonas syringae pv. tagetis based on the 16S-23S rDNA intergenic spacer regions, Biol Control, 32, 356-362, 2005 .

Manceau C, Horvais A, Assessment of genetic diversity among strains of Pseudomonas syringae by PCR-restriction fragment length polymorphism analysis of rRNA operons with special emphasis on P. syringae pv. tomato, Appl Environ Microbiol, 63, 498-505, 1997 Feb [PMID: 9023928] .

Moore ERB, Mau M, Arnscheidt A, Boettger EC, Hutson RA, Collins MD, Van de Peer Y, De Wachter R, Timmis KN, The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships, Syst Appl Microbiol, 19, 478-492, 1996 .

Rezzonico F, Defago G, Moenne-Loccoz Y, Comparison of ATPase-Encoding Type III Secretion System hrcN Genes in Biocontrol Fluorescent Pseudomonads and in Phytopathogenic Proteobacteria, Appl Environ Microbiol, 70, 5119-5131, 2004 Sep [PMID: 15345390] .

Ullstrom CA, Siehnel R, Woodruff W, Steinbach S, Hancock RE, Conservation of the gene for outer membrane protein OprF in the family Pseudomonadaceae: sequence of the Pseudomonas syringae oprF gene, J Bacteriol, 173, 768-775, 1991 Jan [PMID: 1898935] .

Yamamoto S, Kasai H, Arnold DL, Jackson RW, Vivian A, Harayama S, Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes, Microbiology, 146 ( Pt 10), 2385-2394, 2000 Oct [PMID: 11021915] .

  Modify search criteria New search  

A project by Uchrony