GREAT AT SMALL THINGS

LMG strain details

Last data update: 17 December 2013  

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Strain Number: LMG 2112   Add to cart
Speciesname: Pseudomonas agarici Young 1970 AL
Species comment: Authentic Pseudomonas species.
Other collections' numbers: ATCC 25941;CIP 106703;DSM 11810;Dye 2656;ICMP 2656;ICPB PA144;NCPPB 2289;NZRCC 2656;PDDCC 2656;USCC 1921;Young 71A
Restrictions: Biohazard group 1
Status: Type strain
Biological origin: cultivated mushroom (Agaricus bisporus), drippy gills
Geographic origin: New Zealand
Isolated by: J.Young
Depositor: National Collection of Plant Pathogenic Bacteria (NCPPB) United Kingdom
History: <- 1977, National Collection of Plant Pathogenic Bacteria (NCPPB) United Kingdom <- 1970, J.Young (1969)
Conditions for growth on solid media: Medium 2, 28°C
Remarks: Causes drippy gill of cultivated mushrooms
Nucleotide sequences: Pseudomonas agarici partial rpoB gene for DNA-directed RNA polymerase betachain, strain LMG 2112T
EMBL Accession number: AJ717477 (LMG 2112), view at EMBL, GenBank, DDBJ
Length: 1124
Creation date: 2004-09-25

"Pseudomonas agarici LysR family transcriptional regulator (gstR) gene,partial cds; and gamma-carboxymuconolactone decarboxylase CMD (pcaC-1) andgamma-carboxymuconolactone decarboxylase CMD (pcaC-2) genes, complete cds"
EMBL Accession number: AY422467 (ICMP 2656), view at EMBL, GenBank, DDBJ
Length: 3011
Creation date: 2004-04-30

Pseudomonas agarici partial 16S rRNA gene, strain ICMP 2656T
EMBL Accession number: AJ308298 (ICMP 2656), view at EMBL, GenBank, DDBJ
Length: 1370
Creation date: 2002-01-04

Pseudomonas agarici partial recA gene, strain ICMP 2656
EMBL Accession number: AJ316144 (ATCC 25941), view at EMBL, GenBank, DDBJ
Length: 598
Creation date: 2002-01-04

Pseudomonas agarici partial carA gene for carbamoylphosphate synthetasesmall subunit
EMBL Accession number: AJ414209 (ATCC 25941), view at EMBL, GenBank, DDBJ
Length: 624
Creation date: 2002-01-04

Pseudomonas agarici partial atpD gene for atpD beta synthase chain
EMBL Accession number: AJ414233 (ATCC 25941), view at EMBL, GenBank, DDBJ
Length: 776
Creation date: 2002-01-04

"Pseudomonas agarici 16S ribosomal RNA gene, partial sequence; internaltranscribed spacer 1, complete sequence; tRNA-Ile and tRNA-Ala genes,complete sequence; and 23S ribosomal RNA gene, partial sequence"
EMBL Accession number: AF127589 (ATCC 25941), view at EMBL, GenBank, DDBJ
Length: 557
Creation date: 2001-03-14

Pseudomonas agarici gyrB gene for DNA gyrase subunit B, partial cds,strain:NCPPB 2289
EMBL Accession number: AB039457 (NCPPB 2289), view at EMBL, GenBank, DDBJ
Length: 890
Creation date: 2000-11-02

Pseudomonas agarici rpoD gene for DNA-directed RNA polymerase subunit D,partial cds, strain:NCPPB 2289
EMBL Accession number: AB039563 (NCPPB 2289), view at EMBL, GenBank, DDBJ
Length: 804
Creation date: 2000-11-02

Pseudomonas agarici internal transcribed spacer 1 (ITS1), tRNA-Ile gene andtRNA-Ala gene, strain LMG 2112
EMBL Accession number: AJ279243 (LMG 2112), view at EMBL, GenBank, DDBJ
Length: 462
Creation date: 2000-08-16

Pseudomonas agarici OprF (oprF) gene, partial cds
EMBL Accession number: AF117960 (LMG 2112), view at EMBL, GenBank, DDBJ
Length: 965
Creation date: 1999-04-12

Pseudomonas agarici LMG 2112 major outer membrane lipoprotein I (oprI)gene, partial cds
EMBL Accession number: AF065982 (LMG 2112), view at EMBL, GenBank, DDBJ
Length: 249
Creation date: 1998-06-11

P.agarici 16S rRNA gene
EMBL Accession number: Z76652 (LMG 2112), view at EMBL, GenBank, DDBJ
Length: 1491
Creation date: 1997-03-25

Pseudomonas agarici 16S rRNA gene
EMBL Accession number: D84005 (ATCC 25941), view at EMBL, GenBank, DDBJ
Length: 1453
Creation date: 1996-04-11

References: NZ J Agric Res, 13, 977-990, 1970 .

Approved Lists of Bacterial Names, Int J Syst Bacteriol, 30, 225-420, 1980 .

N.Z, J Agric Res, 13, 977-990, 1970 .

Ait Tayeb L, Ageron E, Grimont F, Grimont PA, Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates, Res Microbiol, 156, 763-773, 2005 Jun-Jul [PMID: 15950132] .

Anzai Y, Kudo Y, Oyaizu H, The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera, Int J Syst Bacteriol, 47, 249-251, 1997 Apr [PMID: 9103607] .

Cornelis P, Bouia A, Belarbi A, Guyonvarch A, Kammerer B, Hannaert V, Hubert JC, Cloning and analysis of the gene for the major outer membrane lipoprotein from Pseudomonas aeruginosa, Mol Microbiol, 3, 421-428, 1989 Mar [PMID: 2473376] .

De Vos D, Bouton C, Sarniguet A, De Vos P, Vauterin M, Cornelis P, Sequence diversity of the oprI gene, coding for major outer membrane lipoprotein I, among rRNA group I pseudomonads, J Bacteriol, 180, 6551-6556, 1998 Dec [PMID: 9851998] .

Diard S, Carlier JP, Ageron E, Grimont PA, Langlois V, Guerin P, Bouvet OM, Accumulation of poly(3-hydroxybutyrate) from octanoate in different pseudomonas belonging to the rRNA homology group I, Syst Appl Microbiol, 25, 183-188, 2002 Aug [PMID: 12353870] .

Guasp C, Moore ER, Lalucat J, Bennasar A, Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species, Int J Syst Evol Microbiol, 50 Pt 4, 1629-1639, 2000 Jul [PMID: 10939670] .

Hilario EM, Buckley TR, Young JM, Improved resolution on the phylogenetic relationships among Pseudomonasby the combined analysis of atpD, carA, recA and 16S rDNA, Antonie Van Leeuwenhoek, 86, 51-64, 2004 [PMID: 15103237] .

Lush JL, The possibility of sex control by artificial insemination with centrifuged spermatozoa, J Agric Res, 30, 893-913, 1925 May 15 [PMID: 12255535] .

Moore ERB, Mau M, Arnscheidt A, Boettger EC, Hutson RA, Collins MD, Van de Peer Y, De Wachter R, Timmis KN, The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships, Syst Appl Microbiol, 19, 478-492, 1996 .

Vermeiren H, Willems A, Schoofs G, de Mot R, Keijers V, Hai W, Vanderleyden J, The rice inoculant strain Alcaligenes faecalis A15 is a nitrogen-fixing Pseudomonas stutzeri, Syst Appl Microbiol, 22, 215-224, 1999 May [PMID: 10390872] .

Yamamoto S, Kasai H, Arnold DL, Jackson RW, Vivian A, Harayama S, Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes, Microbiology, 146 ( Pt 10), 2385-2394, 2000 Oct [PMID: 11021915] .

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