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LMG strain details

Last data update: 17 December 2013  

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Strain Number: LMG 5694   Add to cart
Speciesname: Pseudomonas amygdali Psallidas and Panagopoulos 1975 AL
Species comment: Authentic Pseudomonas species.
Subjective synonyms: Pseudomonas ficuserectae Goto 1983 VL
Pseudomonas meliae Ogimi 1981 VL
Other collections' numbers: ATCC 35104;Goto L7;ICMP 7848;JCM 2400;PDDCC 7848
Restrictions: Biohazard group 1
Biological origin: Ficus erecta
Geographic origin: Shizuoka Prefecture Japan
Isolated by: M.Goto
Depositor: International Collection of Micro-organisms from plants (ICMP) New Zealand
History: <- 1983, International Collection of Micro-organisms from plants (ICMP) New Zealand (Pseudomonas ficuserectae) <- M.Goto (1977)
Conditions for growth on solid media: Medium 51, 28°C
Remarks: Type strain of Pseudomonas ficuserectae. Pathogenic to Ficus erecta only;affects leaf and young shoot
Nucleotide sequences: Pseudomonas ficuserectae partial rpoB gene for DNA-directed RNA polymerasebeta chain, strain LMG 5694T
EMBL Accession number: AJ717457 (LMG 5694), view at EMBL, GenBank, DDBJ
Length: 1128
Creation date: 2004-09-25

Pseudomonas ficuserectae hrpS, hrpA, hrpZ, hrpB genes, complete and partialcds, strain: L-7
EMBL Accession number: AB112564 (L7), view at EMBL, GenBank, DDBJ
Length: 2331
Creation date: 2004-06-01

Pseudomonas ficuserectae gyrB gene for DNA gyrase subunit B, partial cds,strain:JCM 2400
EMBL Accession number: AB039418 (JCM 2400), view at EMBL, GenBank, DDBJ
Length: 890
Creation date: 2000-11-02

Pseudomonas ficuserectae rpoD gene for DNA-directed RNA polymerase subunitD, partial cds, strain:JCM 2400
EMBL Accession number: AB039501 (JCM 2400), view at EMBL, GenBank, DDBJ
Length: 807
Creation date: 2000-11-02

Pseudomonas ficuserectae DNA for 16S rRNA, strain JCM 2400T
EMBL Accession number: AB021378 (JCM 2400), view at EMBL, GenBank, DDBJ
Length: 1513
Creation date: 1999-01-22

P.ficuserectae 16S rRNA gene
EMBL Accession number: Z76661 (LMG 5694), view at EMBL, GenBank, DDBJ
Length: 1493
Creation date: 1997-03-25

References: Ait Tayeb L, Ageron E, Grimont F, Grimont PA, Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates, Res Microbiol, 156, 763-773, 2005 Jun-Jul [PMID: 15950132] .

Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H, Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence, Int J Syst Evol Microbiol, 50 Pt 4, 1563-1589, 2000 Jul [PMID: 10939664] .

Gardan L, Shafik H, Belouin S, Broch R, Grimont F, Grimont PA, DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959), Int J Syst Bacteriol, 49 Pt 2, 469-478, 1999 Apr [PMID: 10319466] .

Goto, M, Pseudomonas ficuserectae sp. nov., the causal agent of bacterial leaf spot of Ficus erecta Thunb, Int J Syst Bacteriol, 33, 546-550, 1983 .

Inoue Y, Takikawa Y, The hrpZ and hrpA genes are variable, and useful for grouping Pseudomonas syringae bacteria, J Gen Plant Pathol, 72, 26-33, 2006 .

Moore ERB, Mau M, Arnscheidt A, Boettger EC, Hutson RA, Collins MD, Van de Peer Y, De Wachter R, Timmis KN, The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships, Syst Appl Microbiol, 19, 478-492, 1996 .

Yamamoto S, Kasai H, Arnold DL, Jackson RW, Vivian A, Harayama S, Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes, Microbiology, 146 ( Pt 10), 2385-2394, 2000 Oct [PMID: 11021915] .

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