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LMG strain details

Last data update: 17 December 2013  

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Strain Number: LMG 6133   Add to cart
Speciesname: Ensifer meliloti (Dangeard 1926) Young 2003 VP
Objective synonyms: Rhizobium meliloti Dangeard 1926 AL
Sinorhizobium meliloti (Dangeard 1926) de Lajudie, Willems, Pot, Dewettinck, Maestrojuan, Neyra, Collins, Dreyfus, Kersters and Gillis 1994 VP
Other collections' numbers: ATCC 700747;ATCC 9930;DSM 30135;Erdman 3DOa2;NZP 4027;ORS 665
Restrictions: Biohazard group 1
Status: Type strain
Biological origin: Medicago sativa
Geographic origin: Virginia United States
Depositor: B.Jarvis MASSEY UNIVERSITY New Zealand
History: <- 1984, B.Jarvis MASSEY UNIVERSITY New Zealand NZP 4027 (Rhizobium meliloti)
Conditions for growth on solid media: Medium 203, 28°C
Nucleotide sequences: Sinorhizobium meliloti partial avhB11 gene, type strain LMG 6133T
EMBL Accession number: AM265369 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 372
Creation date: 2008-12-16

Sinorhizobium meliloti pdxP gene for pyridoxine 5'-phosphate phosphatase,complete cds
EMBL Accession number: AB353726 (NBRC 14782), view at EMBL, GenBank, DDBJ
Length: 708
Creation date: 2007-08-03

Sinorhizobium meliloti partial rpsA gene for ribosomal protein S1, strainLMG 6133
EMBL Accession number: AM408378 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 1209
Creation date: 2007-06-04

Sinorhizobium meliloti strain USDA 1002 glutamine synthetase (glnII) gene,partial cds
EMBL Accession number: DQ767676 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 540
Creation date: 2007-05-29

Sinorhizobium meliloti partial atpD gene for ATP synthase beta subunit,strain LMG 6133
EMBL Accession number: AM418760 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 474
Creation date: 2007-05-01

Sinorhizobium meliloti partial gyrB gene for DNA gyrase subunit beta,strain LMG 6133
EMBL Accession number: AM418808 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 672
Creation date: 2007-05-01

Sinorhizobium meliloti strain USDA1002 plasmid N-acyltransferase nodulationprotein (nodA) gene, partial cds
EMBL Accession number: EF457962 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 630
Creation date: 2007-04-02

Sinorhizobium meliloti partial rpoB gene for RNA polymerase beta subunit,strain LMG 6133
EMBL Accession number: AM295384 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 954
Creation date: 2007-03-21

Sinorhizobium meliloti partial gap gene for glyceraldehyde 3-phosphatedehydrogenase, strain LMG 6133
EMBL Accession number: AM295413 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 801
Creation date: 2007-03-21

Sinorhizobium meliloti partial pnp gene for polyribonucleotidenucleotidyltransferase, strain LMG 6133
EMBL Accession number: AM295472 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 540
Creation date: 2007-03-21

Sinorhizobium meliloti strain USDA 1002 N-acetylglucosaminyltransferase(nodC) gene, nodC-3 allele, complete cds
EMBL Accession number: EF428922 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 1281
Creation date: 2007-03-17

Sinorhizobium meliloti strain ATCC 9930 NodC (nodC) gene, partial cds
EMBL Accession number: EF209423 (ATCC 9930), view at EMBL, GenBank, DDBJ
Length: 869
Creation date: 2007-02-06

Sinorhizobium meliloti strain USDA 1002 DNA gyrase subunit A (gyrA) gene,partial cds
EMBL Accession number: DQ411895 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 528
Creation date: 2006-12-31

Sinorhizobium meliloti strain USDA 1002 transcriptional regulatornodulation protein (nolR) gene, partial cds
EMBL Accession number: DQ411914 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 267
Creation date: 2006-12-31

Sinorhizobium meliloti strain USDA 1002 DNA-directed RNA polymerase betachain (rpoB) gene, partial cds
EMBL Accession number: DQ411964 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 672
Creation date: 2006-12-31

Sinorhizobium meliloti strain CECT 4114 dihydropyrimidinase (dhp) gene,complete cds
EMBL Accession number: DQ779921 (CECT 4114), view at EMBL, GenBank, DDBJ
Length: 1455
Creation date: 2006-07-25

Sinorhizobium meliloti partial gltA gene for citrate synthase, strain LMG6133
EMBL Accession number: AM181624 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 642
Creation date: 2006-07-01

Sinorhizobium meliloti partial thrC gene for threonine synthase, strain LMG6133
EMBL Accession number: AM181698 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 633
Creation date: 2006-07-01

Sinorhizobium meliloti partial dnaK gene for molecular chaperone Hsp70,stain LMG 6133
EMBL Accession number: AM182089 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 286
Creation date: 2006-07-01

Sinorhizobium meliloti partial recA gene for recombinase A, strain LMG 6133
EMBL Accession number: AM182133 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 550
Creation date: 2006-07-01

Sinorhizobium meliloti partial glnA gene for glutamine synthase, strain LMG6133
EMBL Accession number: AM182947 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 977
Creation date: 2006-07-01

Sinorhizobium meliloti psymA plasmid partial nodD1 gene, strain USDA1002
EMBL Accession number: AJ583915 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 657
Creation date: 2005-09-30

Sinorhizobium meliloti psymA plasmid partial nifD gene, strain USDA1002
EMBL Accession number: AJ584695 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 374
Creation date: 2005-09-30

Sinorhizobium meliloti tRNA-Ile (GAT) gene for transfer RNA-Ile (GAT) andpartial tRNA-Ala (TGC) gene for transfer RNA-Ala (TGC), strain USDA1002
EMBL Accession number: AJ586993 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 395
Creation date: 2004-10-22

Sinorhizobium meliloti strain CECT 4114 L-N-carbamoylase (hyuC) gene,complete cds
EMBL Accession number: AY646850 (CECT 4114), view at EMBL, GenBank, DDBJ
Length: 1251
Creation date: 2004-07-05

Sinorhizobium meliloti strain CECT 4114 hydantoin racemase (hyuA) gene,complete cds
EMBL Accession number: AY393697 (CECT 4114), view at EMBL, GenBank, DDBJ
Length: 726
Creation date: 2003-10-14

Sinorhizobium meliloti clone CC1079A1 dinitrogenase reductase (nifH) gene,partial cds
EMBL Accession number: AY221811 (NRRL L-45), view at EMBL, GenBank, DDBJ
Length: 324
Creation date: 2003-08-01

Sinorhizobium meliloti strain ATCC 9930 23S ribosomal RNA gene, partialsequence
EMBL Accession number: AY244359 (ATCC 9930), view at EMBL, GenBank, DDBJ
Length: 2862
Creation date: 2003-04-11

"Sinorhizobium meliloti strain LMG 6133 16S ribosomal RNA gene, partialsequence; internal transcribed spacer, complete sequence; and 23S ribosomalRNA, partial sequence"
EMBL Accession number: AF345286 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 1196
Creation date: 2003-01-04

Sinorhizobium meliloti partial recA gene, strain USDA 1002
EMBL Accession number: AJ294382 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 533
Creation date: 2000-08-23

Sinorhizobium meliloti partial atpD gene for ATP synthase beta subunit,strain USDA 1002
EMBL Accession number: AJ294400 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 443
Creation date: 2000-08-23

Sinorhizobium meliloti strain LMG 6133 23S ribosomal RNA gene, partialsequence
EMBL Accession number: AF207786 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 2382
Creation date: 2000-08-10

Sinorhizobium meliloti glutamine synthetase II (glnII) gene, partial cds
EMBL Accession number: AF169593 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 828
Creation date: 1999-12-29

Sinorhizobium meliloti glutamine synthetase (glnA) gene, partial cds
EMBL Accession number: AF169573 (USDA 1002), view at EMBL, GenBank, DDBJ
Length: 942
Creation date: 1999-12-22

Rhizobium meliloti 23S ribosomal RNA gene, partial sequence
EMBL Accession number: U47355 (ATCC 9930), view at EMBL, GenBank, DDBJ
Length: 674
Creation date: 1997-03-30

Sinorhizobium meliloti gene for 16S rRNA, complete sequence, type strain:IAM 12611
EMBL Accession number: D14509 (IAM 12611), view at EMBL, GenBank, DDBJ
Length: 1480
Creation date: 1994-03-25

Sinorhizobium meliloti gene for 16S rRNA, strain: IAM 12611
EMBL Accession number: D12783 (IAM 12611), view at EMBL, GenBank, DDBJ
Length: 1421
Creation date: 1993-06-18

Sinorhizobium meliloti partial 16S rRNA gene, strain LMG 6133
EMBL Accession number: X67222 (LMG 6133), view at EMBL, GenBank, DDBJ
Length: 1437
Creation date: 1993-04-21

Rhizobium meliloti nitrogenase reductase (nifH) gene, partial transcribedregion
EMBL Accession number: M55229 (ATCC 9930), view at EMBL, GenBank, DDBJ
Length: 492
Creation date: 1992-02-27

Rhizobium meliloti 16S ribosomal RNA, partial
EMBL Accession number: M55241 (ATCC 9930), view at EMBL, GenBank, DDBJ
Length: 260
Creation date: 1992-02-04

References: Approved Lists of Bacterial Names, Int J Syst Bacteriol, 30, 225-420, 1980 .

Buchanan, RE, Gibbons, NE, Bergey's manual of determinative Bacteriology, 8th ed., 1974 .

De Lajudie, P, Willems, A, Pot, B, Dewettinck, D, Maestrojuan, G, Neyra, M, Collins, M D, Dreyfus, B, Kersters, K, Gillis, M, Polyphasic taxonomy of Rhizobia: emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov, Int J Syst Bacteriol, 44, 715-733, 1994 .

Eardly BD, Young JP, Selander RK, Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes, Appl Environ Microbiol, 58, 1809-1815, 1992 Jun [PMID: 1377901] .

Gaunt MW, Turner SL, Rigottier-Gois L, Lloyd-Macgilp SA, Young JP, Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia, Int J Syst Evol Microbiol, 51, 2037-2048, 2001 Nov [PMID: 11760945] .

Iglesias O, Rivas R, Garcia-Fraile P, Abril A, Mateos PF, Martinez-Molina E, Velazquez E, Genetic characterization of fast-growing rhizobia able to nodulate Prosopis alba in North Spain, FEMS Microbiol Lett, 277, 210-216, 2007 .

Kwon SW, Park JY, Kim JS, Kang JW, Cho YH, Lim CK, Parker MA, Lee GB, Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences, Int J Syst Evol Microbiol, 55, 263-270, 2005 Jan [PMID: 15653885] .

Lloret L, Ormeno-Orrillo E, Rincon R, Martinez-Romero J, Rogel-Hernandez MA, Martinez-Romero E, Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico, Syst Appl Microbiol, 30, 280-290, 2007 [PMID: 17293074] .

Malik, K A, A new freeze-drying method for the preservation of nitrogen-fixing and other fragile bacteria, J Microbiol Methods, 8, 259-271, 1988 .

Martens M, Dawyndt P, Coopman R, Gillis M, De Vos P, Willems A, Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium), Int J Syst Evol Microbiol, 58, 200-214, 2008 .

Martens M, Delaere M, Coopman R, De Vos P, Gillis M, Willems A, Multilocus sequence analysis of Ensifer and related taxa, Int J Syst Evol Microbiol, 57, 489-503, 2007 Mar [PMID: 17329774] .

Martens M, Weidner S, Linke B, de Vos P, Gillis M, Willems A, A prototype taxonomic microarray targeting the rpsA housekeeping gene permits species identification within the rhizobial genus Ensifer, Syst Appl Microbiol, 30, 390-400, 2007 Jul [PMID: 17291704] .

Martinez-Rodriguez S, Clemente-Jimenez JM, Rodriguez-Vico F, Las Heras-Vazquez FJ, Molecular cloning and biochemical characterization of L-N-carbamoylase from Sinorhizobium meliloti CECT4114, J Mol Microbiol Biotechnol, 9, 16-25, 2005 [PMID: 16254442] .

Martinez-Rodriguez S, Gonzalez-Ramirez LA, Clemente-Jimenez JM, Rodriguez-Vico F, Las Heras-Vazquez FJ, Gavira JA, Garcia-Ruiz JM, Crystallization and preliminary crystallographic studies of the recombinant dihydropyrimidinase from Sinorhizobium meliloti CECT4114, Acta Crystallogr Sect F Struct Biol Cryst Commun, 62, 1223-1226, 2006 Dec 1 [PMID: 17142902] .

Martinez-Rodriguez S, Las Heras-Vazquez FJ, Mingorance-Cazorla L, Clemente-Jimenez JM, Rodriguez-Vico F, Molecular cloning, purification, and biochemical characterization of hydantoin racemase from the legume symbiont Sinorhizobium meliloti CECT 4114, Appl Environ Microbiol, 70, 625-630, 2004 Jan [PMID: 14711700] .

Nagahashi Y, Tazoe M, Hoshino T, Cloning of the Pyridoxine 5'-Phosphate Phosphatase Gene (pdxP) and Vitamin B6 Production in pdxP Recombinant Sinorhizobium meliloti, Biosci Biotechnol Biochem, 72, 421-427, 2008 .

Oyaizu H, Matsumoto S, Minamisawa K, Gamou T, Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification, J Gen Appl Microbiol, 39, 339-354, 1993 .

Pulawska J, Maes M, Willems A, Sobiczewski P, Phylogenetic analysis of 23S rRNA gene sequences of. Agrobacterium, Rhizobium and Sinorhizobium strains, Syst Appl Microbiol, 23, 238-244, 2000 Jun [PMID: 10930076] .

Sawada H, Ieki H, Oyaizu H, Matsumoto S, Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes, Int J Syst Bacteriol, 43, 694-702, 1993 Oct [PMID: 8240952] .

Sawada H, Kuykendall LD, Young JM, Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts, J Gen Appl Microbiol, 49, 155-179, 2003 Jun [PMID: 12949698] .

Silva C, Kan FL, Martinez-Romero E, Population genetic structure of Sinorhizobium meliloti and S. medicae isolated from nodules of Medicago spp. in Mexico, FEMS Microbiol Ecol, 60, 477-489, 2007 Jun [PMID: 17386032] .

Steward GF, Jenkins BD, Ward BB, Zehr JP, Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity, Appl Environ Microbiol, 70, 1455-1465, 2004 Mar [PMID: 15006766] .

Tesfaye M, Peterson DJ, Holl FB, Comparison of partial 23S rDNA sequences from Rhizobium species, Can J Microbiol, 43, 526-533, 1997 Jun [PMID: 9226872] .

Turner SL, Young JP, The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications, Mol Biol Evol, 17, 309-319, 2000 Feb [PMID: 10677854] .

Willems A, Collins MD, Phylogenetic analysis of rhizobia and agrobacteria based on 16S rRNA gene sequences, Int J Syst Bacteriol, 43, 305-313, 1993 Apr [PMID: 8494742] .

Yanagi M, Yamasato K, Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer, FEMS Microbiol Lett, 107, 115-120, 1993 Feb 15 [PMID: 7682191] .

Young JM, "The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination ""Sinorhizobium adhaerens"" (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion", Int J Syst Evol Microbiol, 53, 2107-2110, 2003 Nov [PMID: 14657154] .

Young JM, Kuykendall LD, Martinez-Romero E, Kerr A, Sawada H, A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis, Int J Syst Evol Microbiol, 51, 89-103, 2001 Jan [PMID: 11211278] .

van Berkum P, Badri Y, Elia P, Aouani ME, Eardly BD, Chromosomal and Symbiotic Relationships of Rhizobia Nodulating Medicago truncatula and M. laciniata, Appl Environ Microbiol, 73, 7597-7604, 2007 .

van Berkum P, Terefework Z, Paulin L, Suomalainen S, Lindstrom K, Eardly BD, Discordant phylogenies within the rrn loci of Rhizobia, J Bacteriol, 185, 2988-2998, 2003 May [PMID: 12730157] .

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