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BCCM/LMG bacteria catalogue - Strain details

Last data update: 17 December 2013  

 
 

Strain Number: LMG 2162   Add to cart
Speciesname: Pseudomonas cichorii (Swingle 1925) Stapp 1928 AL
Species comment: Authentic Pseudomonas species.
Other collections' numbers: ATCC 10857;ATCC 19303;ATCC 19474;Burkholder PC1;CCEB 858;CIP 106704;DSM 50259;ICMP 5707;ICPB PC1;IMET 11188;NCPPB 943;NRRL B-832;PDDCC 5707
Restrictions: Biohazard group 1
Status: Type strain
Biological origin: Cichorium endivia
Geographic origin: Germany
Isolated by: W.Kotte
Depositor: National Collection of Plant Pathogenic Bacteria (NCPPB) United Kingdom
History: <- 1981, National Collection of Plant Pathogenic Bacteria (NCPPB) United Kingdom <- 1961, ICPB <- NRRL <- W.Kotte (1929)
Conditions for growth on solid media: Medium 2, 28C
Properties: Production of 6-aminopenicillanic acid
Nucleotide sequences: Pseudomonas cichorii partial putative oprD gene, strain CFBP 2101
EMBL Accession number: AM087421 (CFBP 2101), view at EMBL, GenBank, DDBJ
Length: 1139
Creation date: 2005-09-28

Pseudomonas cichorii partial rpoB gene for DNA-directed RNA polymerase betachain, strain LMG 2162T
EMBL Accession number: AJ717418 (LMG 2162), view at EMBL, GenBank, DDBJ
Length: 1187
Creation date: 2004-09-25

Pseudomonas cichorii partial 16S rRNA gene, type strain ICMP 5707T
EMBL Accession number: AJ308302 (ATCC 10857), view at EMBL, GenBank, DDBJ
Length: 1371
Creation date: 2002-01-04

Pseudomonas cichorii partial recA gene, strain ICMP 5707
EMBL Accession number: AJ316148 (ATCC 10857), view at EMBL, GenBank, DDBJ
Length: 598
Creation date: 2002-01-04

Pseudomonas cichorii partial carA gene for carbamoylphosphate synthetasesmall subunit
EMBL Accession number: AJ414213 (ATCC 10857), view at EMBL, GenBank, DDBJ
Length: 623
Creation date: 2002-01-04

Pseudomonas cichorii partial atpD gene for atpD beta synthase chain
EMBL Accession number: AJ414237 (ATCC 10857), view at EMBL, GenBank, DDBJ
Length: 776
Creation date: 2002-01-04

Pseudomonas cichorii gyrB gene for DNA gyrase subunit B, partial cds,strain:NCPPB 943
EMBL Accession number: AB039434 (NCPPB 943), view at EMBL, GenBank, DDBJ
Length: 890
Creation date: 2000-11-02

Pseudomonas cichorii rpoD gene for DNA-directed RNA polymerase subunit D,partial cds, strain:NCPPB 943
EMBL Accession number: AB039526 (NCPPB 943), view at EMBL, GenBank, DDBJ
Length: 807
Creation date: 2000-11-02

Pseudomonas cichorii internal transcribed spacer 1 (ITS1), tRNA-Ile geneand tRNA-Ala gene, strain DSM 50259
EMBL Accession number: AJ279242 (DSM 50259), view at EMBL, GenBank, DDBJ
Length: 488
Creation date: 2000-08-16

Pseudomonas cichorii OprF (oprF) gene, complete cds
EMBL Accession number: AF117963 (LMG 2162), view at EMBL, GenBank, DDBJ
Length: 1041
Creation date: 1999-04-12

Pseudomonas cichorii DNA for 16S rRNA, strain ATCC 10857T
EMBL Accession number: AB021398 (ATCC 10857), view at EMBL, GenBank, DDBJ
Length: 1505
Creation date: 1999-01-22

Pseudomonas cichorii LMG 2162 major outer membrane lipoprotein I (oprI)gene, partial cds
EMBL Accession number: AF065954 (LMG 2162), view at EMBL, GenBank, DDBJ
Length: 249
Creation date: 1998-06-11

P.cichorii 16S rRNA gene
EMBL Accession number: Z76658 (LMG 2162), view at EMBL, GenBank, DDBJ
Length: 1494
Creation date: 1997-03-25

P.cichorii 23S rRNA gene
EMBL Accession number: X79999 (DSM 50259), view at EMBL, GenBank, DDBJ
Length: 255
Creation date: 1994-11-04

References: Phytopathology, 44, 592, 1954 .

Approved Lists of Bacterial Names, Int J Syst Bacteriol, 30, 225-420, 1980 .

Ait Tayeb L, Ageron E, Grimont F, Grimont PA, Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates, Res Microbiol, 156, 763-773, 2005 Jun-Jul [PMID: 15950132] .

Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H, Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence, Int J Syst Evol Microbiol, 50 Pt 4, 1563-1589, 2000 Jul [PMID: 10939664] .

Chevalier S, Bodilis J, Jaouen T, Barray S, Feuilloley MGJ, Orange N, Sequence diversity of the OprD protein of environmental Pseudomonas strains, Environ Microbiol, 9, 824-835, 2007 [PMID: 17298381] .

Cornelis P, Bouia A, Belarbi A, Guyonvarch A, Kammerer B, Hannaert V, Hubert JC, Cloning and analysis of the gene for the major outer membrane lipoprotein from Pseudomonas aeruginosa, Mol Microbiol, 3, 421-428, 1989 Mar [PMID: 2473376] .

De Vos D, Bouton C, Sarniguet A, De Vos P, Vauterin M, Cornelis P, Sequence diversity of the oprI gene, coding for major outer membrane lipoprotein I, among rRNA group I pseudomonads, J Bacteriol, 180, 6551-6556, 1998 Dec [PMID: 9851998] .

Diard S, Carlier JP, Ageron E, Grimont PA, Langlois V, Guerin P, Bouvet OM, Accumulation of poly(3-hydroxybutyrate) from octanoate in different pseudomonas belonging to the rRNA homology group I, Syst Appl Microbiol, 25, 183-188, 2002 Aug [PMID: 12353870] .

Guasp C, Moore ER, Lalucat J, Bennasar A, Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species, Int J Syst Evol Microbiol, 50 Pt 4, 1629-1639, 2000 Jul [PMID: 10939670] .

Hilario EM, Buckley TR, Young JM, Improved resolution on the phylogenetic relationships among Pseudomonasby the combined analysis of atpD, carA, recA and 16S rDNA, Antonie Van Leeuwenhoek, 86, 51-64, 2004 [PMID: 15103237] .

Huang HT, English AR, Production of 6-aminopenicillanic acid. US Patent 3,239,427 dated Mar 8 1966 .

Huang, H T, English, A R, Production of 6-aminopenicillanic acid .

Ludwig W, Dorn S, Springer N, Kirchhof G, Schleifer KH, PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes, Appl Environ Microbiol, 60, 3236-3244, 1994 Sep [PMID: 7524442] .

Moore ERB, Mau M, Arnscheidt A, Boettger EC, Hutson RA, Collins MD, Van de Peer Y, De Wachter R, Timmis KN, The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships, Syst Appl Microbiol, 19, 478-492, 1996 .

Vermeiren H, Willems A, Schoofs G, de Mot R, Keijers V, Hai W, Vanderleyden J, The rice inoculant strain Alcaligenes faecalis A15 is a nitrogen-fixing Pseudomonas stutzeri, Syst Appl Microbiol, 22, 215-224, 1999 May [PMID: 10390872] .

Yamamoto S, Kasai H, Arnold DL, Jackson RW, Vivian A, Harayama S, Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes, Microbiology, 146 ( Pt 10), 2385-2394, 2000 Oct [PMID: 11021915] .

 
 

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