GREAT AT SMALL THINGS

BCCM/LMG publications

2014

Becker AA, Hesta M, Hollants J, Janssens GP, Huys G. Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae. BMC Microbiol. 2014 Feb 18;14(1):43. doi: 10.1186/1471-2180-14-43. PubMed PMID: 24548488; PubMed Central PMCID: PMC3936777.

Christiaen SE, O'Connell Motherway M, Bottacini F, Lanigan N, Casey PG, Huys G, Nelis HJ, van Sinderen D, Coenye T. Autoinducer-2 Plays a Crucial Role in Gut Colonization and Probiotic Functionality of Bifidobacterium breve UCC2003. PLoS One. 2014 May 28;9(5):e98111. doi: 10.1371/journal.pone.0098111. eCollection 2014. PubMed PMID: 24871429.

De Vuyst L, Van Kerrebroeck S, Harth H, Huys G, Daniel HM, Weckx S. Microbial ecology of sourdough fermentations: Diverse or uniform? Food Microbiol. 2014 Feb;37:11-29. doi: 10.1016/j.fm.2013.06.002. PMID: 24230469

Figge MJ, Cleenwerck I, van Uijen A, De Vos P, Huys G, Robertson L. Photobacterium piscicola sp. nov., isolated from marine fish and spoiled packed cod. Syst Appl Microbiol. 2014 Jul;37(5):329-35. doi: 10.1016/j.syapm.2014.05.003. Epub 2014 May 27. PubMed PMID: 24951451.

Huys, G. The family Aeromonadaceae. 2014. In The Prokaryotes (4th edition) - Gammaproteobacteria. Eds. E. Rosenberg, E.F. DeLong, F. Thompson, S. Lory & E. Stackebrandt, pp. 27-57. Springer-Verlag Berlin Heidelberg, Germany. ISBN 978-3-642-38921-4 (Print), ISBN 978-3-642-38922-1 (Online).

Kiebooms JA, Wauters J, Vanden Bussche J, Houf K, De Vos P, Van Trappen S, Cleenwerck I, Vanhaecke L. Identification and characterisation of thiouracil forming bacteria upon porcine in vitro digestion of Brassicaceae feed. Appl Environ Microbiol. 2014 Sep 26. pii: AEM.02370-14. [Epub ahead of print] PubMed PMID: 25261511.

Li L, Wieme A, Spitaels F, Balzarini T, Nunes OC, Manaia CM, Van Landschoot A, De Vuyst L, Cleenwerck I, Vandamme P. Acetobacter sicerae sp. nov., isolated from cider and kefir, and identification of species of the genus Acetobacter by dnaKgroEL and rpoB sequence analysis. Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2407-15. doi: 10.1099/ijs.0.058354-0. Epub 2014 Apr 24. PubMed PMID: 24763601.

Li L, Praet J, Borremans W, Nunes OC, Manaia CC, Cleenwerck IM, Meeus I, Smagghe G, De Vuyst L, Vandamme PA. Bombella intestini gen. nov., sp. nov., a novel acetic acid bacterium isolated from bumble bee crop. Int J Syst Evol Microbiol. 2014 Oct 21. pii: ijs.0.068049-0. doi: 10.1099/ijs.0.068049-0. [Epub ahead of print] PubMed PMID: 25336723.

Pothakos V, Snauwaert C, De Vos P, Huys G, Devlieghere F. Psychrotrophic members of Leuconostoc gasicomitatum, Leuconostoc gelidum and Lactococcus piscium dominate at the end of shelf-life in packaged and chilled-stored food products in Belgium. Food Microbiol. 2014 May;39:61-7. doi: 10.1016/j.fm.2013.11.005. Epub2013 Nov 19. PubMed PMID: 24387853.

Pothakos V, Snauwaert C, De Vos P, Huys G, Devlieghere F. Monitoring psychrotrophic lactic acid bacteria contamination in a ready-to-eat vegetable salad production environment. Int J Food Microbiol. 2014 Aug 18;185:7-16. doi: 10.1016/j.ijfoodmicro.2014.05.009. Epub 2014 May 15. PubMed PMID: 24927398.

Pothakos V, Taminiau B, Huys G, Nezer C, Daube G, Devlieghere F. Psychrotrophic lactic acid bacteria associated with production batch recalls and  sporadic cases of early spoilage in Belgium between 2010 and 2014. Int J Food Microbiol. 2014 Sep 19;191C:157-163. doi: 10.1016/j.ijfoodmicro.2014.09.013. [Epub ahead of print] PubMed PMID: 25268325.

Safni I, Cleenwerk I, De Vos P, Fegan M, Sly L, Kappler U. Polyphasic taxonomic revision of the Ralstonia solanacearum species complex: proposal to emend the descriptions of R. solanacearum and R. syzygii and reclassify current R. syzygii strains as Ralstonia syzygii subsp. syzygii , R. solanacearum phylotype IV strains as Ralstonia syzygii subsp. indonesiensis subsp. nov., banana blood disease bacterium strains as Ralstonia syzygii subsp. celebesensis subsp. nov. and R. solanacearum phylotypes I and III strains as Ralstonia pseudosolanacearum sp. nov. Int J Syst Evol Microbiol. 2014 Jun 18. pii: ijs.0.066712-0. doi: 10.1099/ijs.0.066712-0. [Epub ahead of print] PubMed PMID: 24944341.

Spitaels F, Li L, Wieme A, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P. Acetobacter lambici sp. nov. isolated from fermenting lambic beer. Int J Syst Evol Microbiol. 2013 Dec 20. doi: 10.1099/ijs.0.057315-0. [Epub  ahead of print] PubMed PMID: 24363299.

Spitaels F, Wieme AD, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P. Gluconobacter cerevisiae sp. nov. isolated from the brewery environment. Int J Syst Evol Microbiol. 2013 Dec 24. doi: 10.1099/ijs.0.059311-0. [Epub ahead of print] PubMed PMID: 24368694.

van der Wolf JM, Nijhuis EH, Kowalewska MJ, Saddler GS, Parkinson N, Elphinstone JG, Pritchard L, Toth IK, Lojkowska E, Potrykus M, Waleron M, De Vos  P, Cleenwerck I, Pirhonen M, Garlant L, Hélias V, Pothier JF, Pflüger V, Duffy B, Tsror L, Manulis S. Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum). Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):768-74. doi: 10.1099/ijs.0.052944-0. Epub 2013 Nov 13. PubMed PMID: 24225027.

 

2013

Brady C, Cleenwerck I, Venter S, Coutinho T, De Vos P. Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter. Syst Appl Microbiol. 2013 Jul; 36(5):309-19.

Castro C, Cleenwerck I, Trcek J, Zuluaga R, De Vos P, Caro G, Aguirre R,Putaux JL, Gañán P. Gluconacetobacter medellinensis sp. nov., cellulose- andnon-cellulose-producing acetic acid bacteria isolated from vinegar. Int J Syst Evol Microbiol. 2013 Mar; 63(Pt 3):1119-25.

Degefu T, Wolde-Meskel E, Liu B, Cleenwerck I, Willems A, Frostegård A. Mesorhizobium shonense sp. nov., Mesorhizobium hawassense sp. nov. and Mesorhizobium abyssinicae sp. nov. isolated from root nodules of different agroforestry legume trees growing in southern Ethiopia. Int J Syst Evol Microbiol. 2013 May; 63(Pt 5):1746-53.

Delcenserie V, Taminiau B, Gavini F, de Schaetzen MA, Cleenwerck I, Theves M, Mahieu M, Daube G. Detection and characterization of Bifidobacterium crudilactis and B. mongoliense able to grow during the manufacturing process of French rawmilk cheeses. BMC Microbiol. 2013 Oct 29;13:239.

González AJ, Cleenwerck I, De Vos P, Fernández-Sanz AM. Pseudomonas asturiensis sp. nov., isolated from soybean and weeds. Syst Appl Microbiol. 2013 Jul; 36(5):320-4.

Huch M, De Bruyne K, Cleenwerck I, Bub A, Cho GS, Watzl B, Snauwaert I, Franz CM, Vandamme P. Streptococcus rubneri sp. nov., isolated from the human throat. Int J Syst Evol Microbiol. 2013 Nov; 63(Pt 11):4026-32.

Nedashkovskaya O, Cleenwerck I, Zhukova N, Kim S, De Vos P. Arenicella chitinivorans sp. nov., a new gammaproteobacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol. 2013 Nov; 63(Pt 11):4124-9.

Slapšak N, Cleenwerck I, De Vos P, Trček J. Gluconacetobacter maltaceti sp.nov., a novel vinegar producing acetic acid bacterium. Syst Appl Microbiol. 2013 Feb; 36(1):17-21.

Spitaels F, Wieme AD, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P. Gluconobacter cerevisiae sp. nov. isolated from the brewery environment. Int J Syst Evol Microbiol. 2013 Dec 24. doi: 10.1099/ijs.0.059311-0.[Epub ahead of print] PubMed PMID: 24368694.

Spitaels F, Li L, Wieme A, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P. Acetobacter lambici sp. nov. isolated from fermenting limbic beer. Int J Syst Evol Microbiol. 2013 Dec 20. doi: 10.1099/ijs.0.057315-0. [Epub ahead of print] PubMed PMID: 24363299.

van der Wolf JM, Nijhuis EH, Kowalewska MJ, Saddler GS, Parkinson N, Elphinstone JG, Pritchard L, Toth IK, Lojkowska E, Potrykus M, Waleron M, De Vos P, Cleenwerck I, Pirhonen M, Garlant L, Hélias V, Pothier JF, Pflüger V, Duffy B, Tsror L, Manulis S. Dickeya solani sp. nov., a pectinolytic plant pathogenic bacterium isolated from potato (Solanum tuberosum). Int J Syst Evol Microbiol. 2013 Nov 13. doi: 10.1099/ijs.0.052944-0. [Epub ahead of print] PubMed PMID:24225027.

He W, Li Y, Ren F, Guo L, Chang J, Cleenwerck I, Ma Y, Wang H. A canker disease of Populus × euramericana in China, caused by Lonsdalea quercina subsp. populi. Plant Disease (doi: http://dx.doi.org/10.1094/PDIS-01-13-0115-RE).

Brinkman BM, Becker A, Ayiseh RB, Hildebrand F, Raes J, Huys G, Vandenabeele P. Gut microbiota affects sensitivity to acute DSS-induced colitis independently of host genotype. Inflam. Bowel Dis. 2013, 19:2560-2567.

Choi JY, Ko G, Jheong W, Huys G, Seifert H, Dijkshoorn L, Ko KS. Acinetobacter kookii sp. nov., isolated from soil. Int J Syst Evol Microbiol. 2013, 63:4402-4406.

Duytschaever G, Huys G, Bekaert M, Boulanger L, De Boeck K, Vandamme P. Dysbiosis of bifidobacteria and Clostridium cluster XIVa in the cystic fibrosis fecal microbiota. J Cyst. Fibr. 2013, 12:206-215.

Duytschaever G, Huys G, Boulanger L, De Boeck K, Vandamme P. Amoxicillin-clavulanic acid resistance in fecal Enterobacteriaceae from patients with cystic fibrosis and healthy siblings. J Cyst Fibr. 2013, 12:780-783.

Hamet MF, Londero A, Medrano M, Vercammen E, Van Hoorde K, Garrote GL, Huys G, Vandamme P, Abraham AG. Application of culture-dependent and culture-independent methods for the identification of Lactobacillus kefiranofaciens in microbial consortia present in kefir grains. Food Microbiol. 2013. 36:327-334.

Huys G, Botteldoorn N, Delvigne F, De Vuyst L, Heyndrickx M, Pot B, Dubois JJ, Daube G. Microbial characterization of probiotics – Advisory report of the Working Group ‘8651 Probiotics’ of the Belgian Superior Health Council (SHC). Mol Nutr Food Res. 2013, 57:1479-1504. DOI: 10.1002/mnfr.201300065.

Savini V., Marrollo R, Carretto E, Fazii P D'Antonio D, Huys G. The Italian Hafnia alvei strain LMG 27376 is Hafnia paralvei. Vet Microbiol. 2013, 167:742-743.

 

2012

Bourdichon F, Casaregola S, Farrokh C, Frisvad JC, Gerds ML, Hammes WP, Harnett J, Huys G, Laulund S, Ouwehand A, Powell IB, Prajapati JB, Seto Y, TerSchure E, Van Boven A, Vankerckhoven V, Zgoda A, Tuijtelaars S, Hansen EB. Food fermentations: Microorganisms with technological beneficial use. IntJ Food Microbiol2012, 154:87-97.

Brady C, Cleenwerck I, Denman S, Venter S, Rodríguez-Palenzuela P, Coutinho TA, De Vos P. Proposal to reclassify Brenneria quercina (Hildebrand & Schroth 1967) Hauben et al. 1999 into a novel genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii. Int J Syst Evol Microbiol. 2012, 62(Pt 7):1592-1602. F469A 03/05/2011 ANNUAL REPORT Page 31 of 49 BCCM annual report 2012 BCCM/LMG 31

Brady CL, Cleenwerck I, van der Westhuizen L, Venter SN, Coutinho TA, De Vos P. Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., three novel Pantoea species isolated from Eucalyptus. Int J Syst Evol Microbiol. 2012, 62(Pt 7):1457-64.

Castro C, Cleenwerck I, Trcek J, Zuluaga R, De Vos P, Caro G, Aguirre R, Putaux JL, Gañán P. Gluconacetobacter medellinensis sp. nov., cellulose- and non-cellulose-producing acetic acid bacteria isolated from vinegar. Int J Syst Evol Microbiol. 2012 Jun 22. Epub ahead of print (PMID: 22729025).

Degefu T, Wolde-Meskel E, Liu B, Cleenwerck I, Willems A, Frostegård A. Mesorhizobium shonense sp. nov., Mesorhizobium hawassense sp. nov. and Mesorhizobium abyssinicae sp. nov. isolated from root nodules of different agroforestry legume trees growing in southern Ethiopia. Int J Syst Evol Microbiol. 2012 Aug Epub ahead of print (PMID: 22941297).

Denman S, Brady C, Kirk S, Cleenwerck I, Venter S, Coutinho T, De Vos P. Brenneria goodwinii sp. nov., associated with acute oak decline in the UK. Int J Syst Evol Microbiol. 2012, 62(Pt 10):2451-6.

Heylen K, Hoefman S, Vekeman B, Peiren J, De Vos P (2012) Safeguarding bacterial resources promotes biotechnological innovation. Appl Microbiol Biotechnol 94(3):565-74 doi:10.1007/s00253-011-3797-y

Huys G, Coopman V, Van Varenbergh D, Cordonnier J. Selective culturing and genus-specific PCR detection for identification of Aeromonas in tissue samples to assist the medico-legal diagnosis of death by drowning. ForenSciInt2012, 221:11-15.

Justé A, Van Trappen S, Verreth C, Cleenwerck I, De Vos P, Lievens B, Willems KA. Characterization of Tetragenococcus strains from sugar thick juice reveals a new species, Tetragenococcus osmophilus sp. nov., and divides Tetragenococcus halophilus into two subspecies, T. halophilus subsp. halophilus subsp. nov. and T. halophilus subsp. flandriensis subsp. nov. Int J Syst Evol Microbiol. 2012, 62(Pt 1):129-37.

Sistek V, Maheux AF, Boissinot M, Bernard KA, Cantin P, Cleenwerck I, De Vos P, Bergeron MG. Enterococcus ureasiticus sp. nov. and Enterococcus quebecensis sp. nov., isolated from water. Int J Syst Evol Microbiol. 2012, 62(Pt 6):1314-20.

Smet A, Flahou B, D'Herde K, Vandamme P, Cleenwerck I, Ducatelle R, Pasmans F, Haesebrouck F. Helicobacter heilmannii sp. nov., isolated from feline gastric mucosa. Int J Syst Evol Microbiol. 2012, 62(Pt 2):299-306. Erratum in: Int J Syst Evol Microbiol. 2012, 62(Pt 4):1016.

Wieme A, Cleenwerck I, Van Landschoot A, Vandamme P. Pediococcus lolii DSM 19927T and JCM 15055T are strains of Pediococcus acidilactici. Int J Syst Evol Microbiol. 2012, 62(Pt 12):3105-8.

 

2011

Brady CL, Goszczynska T, Venter SN, Cleenwerck I, De Vos P, Gitaitis RD, Coutinho TA. Pantoea allii sp. nov., a novel species isolated from onion and onion seed. Int J Syst Evol Microbiol. 2011, 61(Pt 4):932-7.

Brady C, Cleenwerck I, Denman S, Venter S, Rodríguez-Palenzuela P, Coutinho TA, de Vos P. Proposal to reclassify Brenneria quercina (Hildebrand & Schroth 1967) Hauben et al. 1999 into a novel genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii. Int J Syst Evol Microbiol. 2011 Sep 2. Epub ahead of print (PMID: 21890733).

Brady CL, Cleenwerck IM, van der Westhuizen L, Venter SN, Coutinho TA, De Vos P. Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., three novel Pantoea species isolated from Eucalyptus. Int J Syst Evol Microbiol. 2011 Aug 12. Epub ahead of print (PMID: 21841003).

Brady CL, Goszczynska T, Venter SN, Cleenwerck I, De Vos P, Gitaitis RD, Coutinho TA. Pantoea allii sp. nov., a novel species isolated from onion and onion seed. Int J Syst Evol Microbiol. 2011, 61(Pt 4):932-7.

Chimetto L, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FL. Vibrio variabilis sp. nov. and Vibrio marinus sp. nov., isolated from Palythoa caribaeorum Int J Syst Evol Microbiol. 2011, 61(Pt 12):3009-15.

Chimetto LA, Cleenwerck I, Alves N Jr, Silva BS, Brocchi M, Willems A, De Vos P, Thompson FL. Vibrio communis sp. nov. isolated from marine animals (Mussismilia hispida, Phyllogorgia dilatata, Palythoa caribaeorum, Palythoavariabilis and Litopenaeus vannamei). Int J Syst Evol Microbiol. 2011, 61(Pt 2):362-8.

Chimetto LA, Cleenwerck I, Brocchi M, Willems A, De Vos P, Thompson FL. Marinomonas brasiliensis sp. nov. isolated from the coral Mussismilia hispida and reclassification of Marinomonas basaltis as a later synonym of Marinomonas communis. Int J Syst Evol Microbiol. 2011, 61(Pt 5):1170-5.

Chimetto LA, Cleenwerck I, Brocchi M, Willems A, De Vos P, Thompson FL. Marinobacterium coralli sp. nov., isolated from coral mucus (Mussismilia hispida). Int J Syst Evol Microbiol. 2011, 61(Pt 1):60-64.

Denman S, Brady C, Kirk S, Cleenwerck I, Venter S, Coutinho T, de Vos P. Brenneria goodwinii sp. nov., a novel species associated with Acute Oak Decline in Britain. Int J Syst Evol Microbiol. 2011 Nov 25. Epub ahead of print (PMID: 22140177).

Diéguez AL, Beaz-Hidalgo R, Cleenwerck IM, Balboa S, De Vos P, Romalde JL. Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov. isolated from clams Ruditapes philippinarum and R. decussatus. Int J Syst Evol Microbiol. 2011, 61(Pt 10):2406-11.

Duytschaever, G., G. Huys, M. Bekaert, L. Boulanger, K. De Boeck, P. Vandamme. Cross-sectional and longitudinal comparison of the predominant fecal microbiota compositions of a group of pediatric patients with cystic fibrosis and their healthy siblings. Appl. Environ. Microbiol. 2011; 77:8015-8024.

Holzinger, A., D. Nagendra-Prasad, G. Huys. Ultrastructure and plant protection potential of Bacillus subtilis strain 3A25. Crop Prot. 2011; 30:739-744.

Joossens, M., G. Huys, K. Van Steen, M. Cnockaert, S. Vermeire, P. Rutgeerts, K. Verbeke, P. Vandamme, V. De Preter. High-throughput method for comparative analysis of denaturing gradient gel electrophoresis profiles from human fecal samples reveals significant increase in two bifidobacterial species after inulin-type prebiotic intake. FEMS Microbiol. Ecol. 2011; 75:343-349.

Joossens, M., G. Huys, M. Cnockaert, V. De Preter, K. Verbeke, P. Rutgeerts, P. Vandamme, S. Vermeire. Dysbiosis of the fecal microbiota in patients with Crohn’s disease and their unaffected relatives. Gut 2011; 60:631-637.

Justé A, Van Trappen S, Verreth C, Cleenwerck I, De Vos P, Lievens B, Willems KA. Characterization of Tetragenococcus strains from sugar thick juice reveals a new species, Tetragenococcus osmophilus sp. nov., and divides Tetragenococcus halophilus into two subspecies, T. halophilus subsp. halophilus subsp. nov. and T. halophilus subsp. flandriensis subsp. nov. Int J Syst Evol Microbiol. 2012, 62(Pt 1):129-37.

Madoroba, E., E.T. Steenkamp, J. Theron, I. Scheirlinck, T.E. Cloete, G. Huys. Diversity and dynamics of bacterial populations during spontaneous sorghum fermentations used to produce ting, a South African food. Syst. Appl. Microbiol. 2011; 34:227-234.

Moretti C, Hosni T, Vandemeulebroecke K, Brady C, De Vos P, Buonaurio R, Cleenwerck I. Erwinia oleae sp. nov., isolated from olive knots caused by Pseudomonas savastanoi pv. savastanoi. Int J Syst Evol Microbiol. 2011, 61(Pt 11):2745-52.

Nedashkovskaya OI, Van Trappen S, Frolova GM, De Vos P. Bacillus berkeleyi sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Arch Microbiol. 2012;194(3):215-221.

Pablos, M., G. Huys, M. Cnockaert, J.M. Rodríguez-Calleja, A. Otero, J.A. Santos, M.L. García-López. Identification and epidemiological relationships of Aeromonas isolates from patients with diarrhoea. Int. J. Food Microbiol. 2011; 147:203-210.

Ramos PL, Moreira-Filho CA, Van Trappen S, Swings J, De Vos P, Barbosa HR, Thompson CC, Vasconcelos AT, Thompson FL. An MLSA-based online scheme for the rapid identification of Stenotrophomonas isolates. Mem Inst Oswaldo Cruz. 2011; 106(4):394-399.

Sistek V, Maheux AF, Boissinot M, Bernard KA, Cantin P, Cleenwerck I, de Vos P, Bergeron MG. Two novel species, Enterococcus ureasiticus sp. nov. and Enterococcus quebecensis sp. nov., isolated from water. Int J Syst Evol Microbiol. 2011 Aug 5. Epub ahead of print (PMID: 21788227).

Smet A, Flahou B, D'Herde K, Vandamme PA, Cleenwerck IM, Ducatelle R, Pasmans F, Haesebrouck F. Helicobacter heilmannii sp. nov., isolated from the feline gastric mucosa. Int J Syst Evol Microbiol. 2012, 62(Pt 2):299-306.

Vanden Bempt I, Van Trappen S, Cleenwerck I, De Vos P, Camps K, Celens A, Van De Vyvere M. Actinobaculum schaalii causing Fournier's gangrene. J Clin Microbiol. 2011, 49(6):2369-71.

Weckx, S., J. Allemeersch, R. Van der Meulen, G. Vrancken, G. Huys, P. Vandamme, P. Van Hummelen, L. De Vuyst. Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations. Appl. Environ. Microbiol. 2011; 77:618-626.

 

2010

Audenaert K, D’Haene K, Messens K, Ruyssen T, Vandamme P, Huys G. Diversity of lactic acid bacteria from modified atmosphere packaged sliced cooked meat products at sell-by date assessed by PCR-denaturing gradient gel electrophoresis. Food Microbiol. 2010; 27:12-18.

Beaz-Hidalgo R, Diéguez AL, Cleenwerck I, Balboa S, Doce A, De Vos P, Romalde JL. Vibrio celticus sp. nov., a new Vibrio species belonging to the Splendidus clade with pathogenic potential for clams. Syst Appl Microbiol. 2010, 33(6):311-5.

Bin Kingombe C, D’Aoust J-Y, Huys G, Hofmann L, Rao M, Kwan J. Multiplex PCR method for detection of three Aeromonas enterotoxin genes. Appl. Environ. Microbiol. 2010; 76:425-433.

Brady CL, Cleenwerck I, Venter SN, Engelbeen K, De Vos P, Coutinho TA. Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov. Int J Syst Evol Microbiol. 2010, 60(Pt 10):2430-40.

Brady CL, Goszczynska T, Venter SN, Cleenwerck I, De Vos P, Gitaitis RD, Coutinho TA. Pantoea allii sp. nov., a novel species isolated from onion and onion seed. Int J Syst Evol Microbiol. 2010 May 21. Epub ahead of print (PMID: 20495023).

Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TA. Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov. Int J Syst Evol Microbiol. 2010; 60(Pt 3):484-94.

Chimetto L, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FL. Vibrio variabilis sp. nov. and Vibrio marinus sp. nov., isolated from Palythoa caribaeorum Int J Syst Evol Microbiol. 2011 Feb 4. Epub ahead of print (PMID: 21296931).

Chimetto LA, Cleenwerck I, Alves N Jr, Silva BS, Brocchi M, Willems A, De Vos P, Thompson FL. Vibrio communis sp. nov. isolated from marine animals (Mussismilia hispida, Phyllogorgia dilatata, Palythoa caribaeorum, Palythoavariabilis and Litopenaeus vannamei). Int J Syst Evol Microbiol. 2011, 61(Pt 2):362-368.

Chimetto LA, Cleenwerck I, Brocchi M, Willems A, De Vos P, Thompson FL. Marinomonas brasiliensis sp. nov. isolated from the coral Mussismilia hispida and reclassification of Marinomonas basaltis as a later synonym of Marinomonas communis. Int J Syst Evol Microbiol. 2010 Jun 18. Epub ahead of print (PMID: 20562247).

Chimetto LA, Cleenwerck I, Brocchi M, Willems A, De Vos P, Thompson FL. Marinobacterium coralli sp. nov., isolated from coral mucus (Mussismilia hispida). Int J Syst Evol Microbiol. 2011, 61(Pt 1):60-64.

Chimetto LA, Cleenwerck I, Thompson CC, Brocchi M, Willems A, De Vos P, Thompson FL. Photobacterium jeanii sp. nov., isolated from corals and zoanthids. Int J Syst Evol Microbiol. 2010, 60(Pt 12):2843-8.

Cleenwerck I, De Vos P, De Vuyst L. Phylogeny and differentiation of species of the genus Gluconacetobacter and related taxa based on multilocus sequence analyses of housekeeping genes and reclassification of Acetobacter xylinus subsp. sucrofermentans as Gluconacetobacter sucrofermentans (Toyosaki et al. 1996) sp. nov., comb. nov. Int J Syst Evol Microbiol. 2010, 60(Pt 10):2277-83.

Diéguez AL, Beaz-Hidalgo R, Cleenwerck IM, Balboa S, De Vos P, Romalde JL. Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov. isolated from clams Ruditapes philippinarum and R. decussatus. Int J Syst Evol Microbiol. 2010 Nov 12. Epub ahead of print (PMID: 21075909).

Huys G, D’Haene K, Cnockaert M, Tosi L, Danielsen M, Flórez AB, Mättö J, Axelsson L, Korhonen J, Mayrhofer S, Egervärn M, Giacomini M, Vandamme P. Intra- and interlaboratory performances of two commercial antimicrobial susceptibility testing methods for bifidobacteria and nonenterococcal lactic acid bacteria. Antimicrob. Agents Chemother. 2010; 54:2567-2574.

Huys G, Cnockaert M, Abbott SL, Janda JM, Vandamme P. Hafnia paralvei sp. nov., formerly known as Hafnia alvei hybridization group 2. Int. J. Syst. Evol. Microbiol. 2010; 60:1725-1728.

Justé A, Van Trappen S, Verreth C, Cleenwerck I, De Vos P, Lievens B, Willems KA. Characterization of Tetragenococcus strains from sugar thick juice reveals a new species, Tetragenococcus osmophilus sp. nov., and divides Tetragenococcus halophilus into two subspecies, T. halophilus subsp. halophilus subsp. nov. and T. halophilus subsp. flandriensis subsp. nov. Int J Syst Evol Microbiol. 2011 Feb 25. Epub ahead of print (PMID: 21357458).

Korhonen J, van Hoek AHAM, Saarela M, Huys G, Tosi L, Mayrhofer S, von Wright A. Antimicrobial susceptibility of Lactobacillus rhamnosus. Beneficial Microbes 2010; 1:75-80.

Mayrhofer S, van Hoek AHAM, Mair C, Huys G,  Aarts H, Kneifel W, Domig K. 2010. Antibiotic susceptibility of members of the Lactobacillus acidophilus group using broth microdilution and molecular identification of their resistance determinants. Int. J. Food Microbiol. 2010; 144:81-87.

Moretti C, Hosni T, Vandemeulebroecke K, Brady C, De Vos P, Buonaurio R, Cleenwerck I. Erwinia oleae sp. nov., isolated from olive knots caused by Pseudomonas savastanoi pv. savastanoi. Int J Syst Evol Microbiol. 2010 Dec 24. Epub ahead of print (PubMed PMID: 21186287).

Popp A, Cleenwerck I, Iversen C, De Vos P, Stephan R. Pantoea gaviniae sp. nov. and Pantoea calida sp. nov. isolated from infant formula and infant formula production environment. Int J Syst Evol Microbiol. 2010, 60(Pt 12):2786-92.

Ramos PL, Van Trappen S, Thompson FL, Rocha RC, Barbosa HR, De Vos P, Moreira-Filho CA. Screening for endophytic nitrogen-fixing bacteria in Brazilian sugarcane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov. Int J Syst Evol Microbiol. 2010 May 21; Epub ahead of print (PMID: 20495025).

Sanders ME, Akkermans LMA, Haller D, Hammerman C, Heimbach J, Hörmannsperger G, Huys G, Levy DD, Lutgendorff F, Mack D, Phothirath P, Solano-Aguilar G, Vaughan E. Safety assessment of probiotics for human use. Gut Microbes 2010; 1:1-22.

Smet A, Flahou B, D'Herde K, Vandamme PA, Cleenwerck IM, Ducatelle R, Pasmans F, Haesebrouck F. Helicobacter heilmannii sp. nov., isolated from the feline gastric mucosa. Int J Syst Evol Microbiol. 2011 Mar 18. Epub ahead of print (PMID: 21421932).

Supré K, De Vliegher S, Cleenwerck I, Engelbeen K, Van Trappen S, Piepers S, Sampimon OC, Zadoks RN, De Vos P, Haesebrouck F. Staphylococcus devriesei sp. nov., isolated from teat apices and milk of dairy cows. Int J Syst Evol Microbiol. 2010; 60(Pt 12): 2739-44.

van der Reijden WA, Brunner J, Bosch-Tijhof CJ, Van Trappen S, Rijnsburger MC, de Graaff MP, van Winkelhoff AJ, Cleenwerck I, De Vos P. Phylogenetic variation of Aggregatibacter actinomycetemcomitans serotype e reveals an aberrant distinct evolutionary stable lineage. Infect Genet Evol. 2010; 10(7): 1124-31.

Van Hoorde K, Heyndrickx M, Vandamme P, Huys G. Influence of pasteurization, brining conditions and production environment on the microbiota of artisan Gouda-type cheeses. Food Microbiol. 2010; 27:425-433.

Van Hoorde K, Van Leuven I, Dirinck P, Heyndrickx M, Coudijzer K, Vandamme P, Huys G. Selection, application and monitoring of Lactobacillus paracasei strains as adjunct cultures in the production of Gouda-type cheeses. Int. J. Food Microbiol. 2010; 144:226-235.

Vrancken G, De Vuyst L, Van der Meulen R, Huys G, Vandamme P, Daniel HM. Yeast species composition differs between artisan bakery and spontaneous laboratory sourdoughs. FEMS Yeast Res. 2010; 10:471-481.

Weckx S, Van der Meulen R, Allemeersch J, Huys G, Vandamme P, Van Hummelen P, De Vuyst L. Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome. Appl. Environ. Microbiol. 2010; 76:5402-5408.

Weckx S, Van der Meulen R, Maes D, Scheirlinck I, Huys G, Vandamme P, De Vuyst L. Lactic acid bacteria community dynamics and metabolite production of rye sourdough fermentations share characteristics of wheat and spelt sourdough fermentations. Food Microbiol. 2010; 27:1000-1008.

Wind RD, Tolboom H, Klare I, Huys G, Knol J. Tolerance and safety of the potentially probiotic strain Lactobacillus rhamnosus PRSF-L477: a randomized, double-blind placebo-controlled trial in healthy volunteers. Brit. J. Nutr. 2010; 104:1806-1816.

Zago M, Huys G, Giraffa G. Molecular basis and transferability of tetracycline resistance in Enterococcus italicus LMG 22195 from fermented milk. Int. J. Food Microbiol. 2010; 142:234-236.

 

2009

Abraham WR, Estrela AB, Nikitin DI, Smit J, Vancanneyt M. Proposal of Brevundimonas halotolerans sp. nov., Brevundimonas poindexterae sp. nov. and Brevundimonas staleyi sp. nov., prosthecate bacteria from aquatic habitats. Int J Syst Evol Microbiol. 2009 Sep 18.

Beaz Hidalgo R, Cleenwerck I, Balboa S, Prado S, De Vos P, Romalde JL. Vibrio breoganii sp. nov., a non-motile, alginolytic, marine bacterium within the Vibrio halioticoli clade. Int J Syst Evol Microbiol. 2009; 59 (Pt 7):1589-94. PMID: 19542146

Bouizgarne, Brahim; Lanoot, Benjamin; Loqman, Souad; Spröer, Cathrin; Klenk, Hans-Peter; Swings, Jean and Ouhdouch, Yedir. Streptomyces marokkonensis sp. nov., isolated from rhizosphere soil of Argania spinosa L. Int J Syst Evol Microbiol. 2009; 59:2857

Brady CL, Venter SN, Cleenwerck I, Engelbeen K, de Vos P, Wingfield MJ, Telechea N, Coutinho TA. Isolation of Enterobacter cowanii from Eucalyptus showing symptoms of bacterial blight and dieback in Uruguay. Lett Appl Microbiol. 2009, 49(4): 461-5. PMID: 19674289

Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TA. Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov. Int J Syst Evol Microbiol. 2009, 59(Pt 9): 2339-45. PMID: 19620357

Cleenwerck I, De Wachter M, González A, De Vuyst L, De Vos P. Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii. Int J Syst Evol Microbiol. 2009; 59(Pt 7):1771-86. PMID: 19542117

Collado L, Cleenwerck I, Van Trappen S, De Vos P, Figueras MJ. Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels. Int J Syst Evol Microbiol. 2009; 59(Pt 6): 1391-6. PMID: 19502322

Papalexandratou Z, Cleenwerck I, De Vos P, De Vuyst L. (GTG)5-PCR reference framework for acetic acid bacteria. FEMS Microbiol Lett. 2009; 301(1): 44-9. PMID: 19824903

Pinhassi, J., Nedashkovskaya, O.I., Hagström, Å., Vancanneyt, M. (2009). Winogradskyella rapida, sp. nov., isolated from protein-enriched seawater. Int J Syst Evol Microbiol. 59. 2180-2184.

Ouadghiri, M., Vancanneyt, M., Vandamme, P., Naser, S., Gevers, G., Lefebvre, K., Swings, J. and Amar, M. (2009). Identification of lactic acid bacteria in Moroccan raw milk and traditionally fermented skimmed milk ‘lben’. Journal of Applied Microbiology. 106: 486–495

 

2008

Abraham WR, Macedo AJ, Lünsdorf H, Fischer R, Pawelczyk S, Smit J, Vancanneyt M. Phylogeny by a polyphasic approach of the order Caulobacterales, proposal of Caulobacter mirabilis sp. nov., Phenylobacterium haematophilum sp. nov. and Phenylobacterium conjunctum sp. nov., and emendation of the genus Phenylobacterium. Int J Syst Evol Microbiol. 2008 Aug;58(Pt 8):1939-49.

Beaz Hildago R, Cleenwerck I, Balboa S, De Wachter M, Thompson FL, Swings J, De Vos P, Romalde JL. Diversity of vibrios associated with reared clams in Galicia (NW Spain). Syst Appl Microbiol, 31(3), pp. 215-222, 2008.

Bora N, Vancanneyt M, Gelsomino R, Snauwaert C, Swings J, Jones AL, Ward AC, Chamba JF, Kroppenstedt RM, Schumann P, Goodfellow M. Mycetocola reblochoni sp. nov., isolated from the surface microbial flora of Reblochon cheese. Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2687-93.

Brady C, Cleenwerck I, Venter S, Vancanneyt M, Swings J, Coutinho T. Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA). Syst Appl Microbiol, 31(6-8), pp. 413-417, 2008.

Cleenwerck I, De Vos P. Polyphasic taxonomy of acetic acid bacteria: an overview of the currently applied methodology. Int J Food Microbiol, 125(1), pp. 2-14, 2008.

Cleenwerck I, González Á, Camu N, Engelbeen K, De Vos P, De Vuyst L. Acetobacter fabarum sp. nov., a Ghanaian cocoa bean heap fermentation acetic acid bacterium. Int J Syst Evol Microbiol, 58(9), pp. 2180-2185, 2008.

De Bruyne K, Camu N, Lefebvre K, De Vuyst L, Vandamme P. Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation. Int J Syst Evol Microbiol, 58(12), pp. 2721-2725, 2008.

De Bruyne K, Franz CM, Vancanneyt M, Schillinger U, Mozzi F, de Valdez GF, De Vuyst L, Vandamme P. Pediococcus argentinicus sp. nov. from Argentinean fermented wheat flour and identification of Pediococcus species by pheS, rpoA and atpA sequence analysis. Int J Syst Evol Microbiol, 58(12), pp. 2909-2916, 2008.

De Vuyst L, Camu N, De Winter T, Vandemeulebroecke K, Van de Perre V, Vancanneyt M, De Vos P, Cleenwerck I. Validation of the (GTG)5-rep-PCR fingerpirnting technique for rapid classification and identification of acetic acid bacteria, with a focus on isolates from Ghanaian fermented cocoa beans. Int J Food Microbiol, 125(1), pp. 79-90, 2008.

Eeckhaut V, Van Immerseel F, Teirlynck E, Pasmans F, Fievez V, Snauwaert C, Haesebrouck F, Ducatelle R, Louis P, Vandamme P. Butyricicoccus pullicaecorum gen. nov., sp. nov., an anaerobic, butyrate-producing bacterium isolated from the caecal content of a broiler chicken. Int J Syst Evol Microbiol, 58(12), pp. 2799-2802, 2008.

Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, De Pamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol, 26(5), pp. 541-547, 2008.

Goerges S, Mounier J, Rea MC, Gelsomino R, Heise V, Beduhn R, Cogan TM, Vancanneyt M, Scherer S. Commercial ripening starter microorganisms inoculated into cheese milk do not successfully establish themselves in the resident microbial ripening consortia of a South german red smear cheese. Appl Environ Microbiol. 2008 Apr;74(7):2210-7.

Guinebretière MH, Thompson FL, Sorokin A, Normand P, Dawyndt P, Ehling-Schulz M, Svensson B, Sanchis V, Nguyen-The C, Heyndrickx M, De Vos P. Ecological diversification in the Bacillus cereus Group. Environ Microbiol. 2008 Apr;10(4):851-65.

Leisner JJ, Vogensen FK, Kollmann J, Aideh B, Vandamme P, Vancanneyt M, Ingmer H. alpha-Chitinase activity among lactic acid bacteria. Syst Appl Microbiol, 31(2), pp. 151-156, 2008.

Ouadghiri M, Vancanneyt M, Vandamme P, Naser S, Gevers D, Lefebvre K, Swings J, Amar M. Identification of lactic acid bacteria in Moroccan raw milk and traditionally fermented skimmed milk 'lben'. J Appl Microbiol. 2008 Nov 29.

Scheirlinck I, Van der Meulen R, Van Schoor A, Vancanneyt M, De Vuyst L, Vandamme P, Huys G. Taxonomic structure and stability of the bacterial community in belgian sourdough ecosystems as assessed by culture and population fingerprinting. Appl Environ Microbiol. 2008 Apr;74(8):2414-23.

Slabbinck B, Dawyndt P, Martens M, De Vos P, De Baets B. TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers. Bioinformatics. 2008 Mar 15; 24(6):866-7.

Slabbinck B, De Baets B, Dawyndt P, De Vos P. Genus-wide Bacillus species identification through proper artificial neuralnetwork experiments on fatty acid profiles. Antonie Van Leeuwenhoek. 2008 Aug; 94(2):187-98.

Stephan R, Van Trappen S, Cleenwerck I, Iversen C, Joosten H, De Vos P, Lehner A. Enterobacter pulveris sp. nov., isolated from fruit powder, infant formula and an infant formula production environment. Int J Syst Evol Microbiol 58(1), pp. 237-241, 2008.

Van Brabant B, Gray T, Verslyppe B, Kyrpides N, Dietrich K, Glöckner FO, Cole J, Farris R, Schriml LM, De Vos P, De Baets B, Field D, Dawyndt P; Genomic Standards Consortium. Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers. OMICS. 2008 Jun;12(2):123-7.

Vanhaecke L, Vercruysse F, Boon N, Verstraete W, Cleenwerck I, De Wachter M, De Vos P, van de Wiele T. Isolation and characterization of human intestinal bacteria, capable of transforming the dietary carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine. Appl Environ Microbiol, 74(5), pp. 1469-1477, 2008.

Vankerckhoven V, Huys G, Vancanneyt M, Snauwaert C, Swings J, Klare I, Witte W, Van Autgaerden T, Chapelle S, Lammens C, Goossens H. Genotypic diversity, antimicrobial resistance, and virulence factors of human isolates and probiotic cultures constituting two intraspecific groups of Enterococcus faecium isolates. Appl Environ Microbiol. 2008 Jul;74(14):4247-55.

Vereecke C, Arahal DR. The status of the species Pectinatus portalensis Gonzalez et al. 2005. Request for an Opinion. Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1507.

 

2007

Ast JC, Cleenwerck I, Engelbeen K, Urbanczyk H, Thompson FL, De Vos P, Dunlap PV.  Photobacterium kishitanii sp. nov., a luminous marine bacterium symbiotic with deep-sea fishes. Int J Syst Evol Microbiol. 2007 Sep 57(Pt 9):2073-8.

Brady C, Venter S, Cleenwerck I, Vancanneyt M, Swings J, Coutinho T.  A FAFLP system for the improved identification of plant-pathogenic and plant-associated species of the genus Pantoea. Syst Appl Microbiol. 2007 Jul 30 (5):413-7. Epub 2007 Feb 26.

Camu N, De Winter T, Verbrugghe K, Cleenwerck I, Vandamme P, Takrama JS, Vancanneyt M, De Vuyst L.  Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana. Appl Environ Microbiol. 2007 Mar;73 (6):1809-24. Epub 2007 Feb 2.

Cleenwerck I, Camu N, Engelbeen K, De Winter T, Vandemeulebroecke K, De Vos P, De Vuyst L.  Acetobacter ghanensis sp. nov., a novel acetic acid bacterium isolated from traditional heap fermentations of Ghanaian cocoa beans. Int J Syst Evol Microbiol. 2007 Jul 57 (Pt 7):1647-52.

De Bruyne K, Schillinger U, Caroline L, Boehringer B, Cleenwerck I, Vancanneyt M, De Vuyst L, Franz CM, Vandamme P.  Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species. Int J Syst Evol Microbiol. 57 (Pt 12):2952-9, 2007.

Huys G, Vancanneyt M, D'Haene K, Falsen E, Wauters G, and Vandamme P.  Alloscardovia omnicolens gen. nov., sp. nov., from human clinical samples. Int J Syst Evol Microbiol, Jul 2007; 57: 1442 - 1446.

Iversen C, Lehner A, Mullane N, Bidlas E, Cleenwerck I, Marugg J, Fanning S, Stephan R, Joosten H.  The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1. BMC Evol Biol. 2007 Apr 17;7:64.

Jordan EM, Thompson F, Zhang X-H, Li Y, Vancanneyt M, Kroppenstedt RM, Priest FG, and Austin B.  Sneathiella chinensis gen. nov., sp. nov., a novel marine alphaproteobacterium isolated from coastal sediment in Qingdao, China. Int J Syst Evol Microbiol, Jan 2007; 57: 114 - 121.

Jurkovič D., Križková L., Sojka M., Takáčová M., Dušinský R., Krajčovič J., Vandamme P., and Vancanneyt M. 2007.  Genetic diversity of Enterococcus faecium isolated from bryndza cheese. Int. J. Food Microbiol. 116:82-87.

Kagkli D. M., Vancanneyt M., Vandamme P., Hill C., and Cogan T. M.  2007. Contamination of milk by enterococci and coliforms from bovine faeces. J. Appl. Microbiol. 103:1393-1405.

Kagkli D. M., Vancanneyt M., Hill C., Vandamme P., and Cogan T. M.  2007. Enterococcus and Lactobacillus contamination of raw milk in a farm dairy environment. Int. J. Food Microbiol. 114:243-251.

Naser SM, Dawyndt P, Hoste B, Gevers D, Vandemeulebroecke K, Cleenwerck I, Vancanneyt M, Swings J.  Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol. 2007 Dec;57(Pt 12):2777-89.

Bora N, Vancanneyt M, Gelsomino R, Swings J, Brennan N, Cogan TM, Larpin S, Desmasures N, Eliskases Lechner F, Kroppenstedt RM, Ward AC, and Goodfellow M.  Agrococcus casei sp. nov., isolated from the surfaces of smear-ripened cheeses. Int J Syst Evol Microbiol, Jan 2007; 57: 92 - 97.

Ndoye B, Cleenwerck I, Engelbeen K, Dubois-Dauphin R, Guiro AT, Van Trappen S, Willems A, Thonart P.  Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.). Int J Syst Evol Microbiol. 2007 Jul 57(Pt 7):1576-81.

Nedashkovskaya OI, Vancanneyt M, De Vos P, Kim SB, Lee MS, and Mikhailov VV.  Maribacter polysiphoniae sp. nov., isolated from a red alga. Int J Syst Evol Microbiol, Dec 2007; 57: 2840 - 2843.

Nedashkovskaya OI, Kim SB, Hoste B, Shin DS, Beleneva IA, Vancanneyt M, and Mikhailov VV.  Echinicola vietnamensis sp. nov., a member of the phylum Bacteroidetes isolated from seawater. Int J Syst Evol Microbiol, Apr 2007; 57: 761 - 763.

Nedashkovskaya OI, Vancanneyt M, Kim SB, Hoste B, and Bae KS.  Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter. Int J Syst Evol Microbiol, Sep 2007; 57: 2147 - 2150.

Scheirlinck I, Van der Meulen R, Van Schoor A, Vancanneyt M, De Vuyst L, Vandamme P, and Huys G.  Influence of Geographical Origin and Flour Type on Diversity of Lactic Acid Bacteria in Traditional Belgian Sourdoughs. Appl. Envir. Microbiol. 2007 73: 6262-6269.

Scheirlinck I, Van der Meulen R, Van Schoor A, Huys G, Vandamme P, De Vuyst L, and Vancanneyt M.  Lactobacillus crustorum sp. nov., isolated from two traditional Belgian wheat sourdoughs.Int J Syst Evol Microbiol, Jul 2007; 57: 1461 - 1467.

Scheirlinck I, Van der Meulen R, Van Schoor A, Cleenwerck I, Huys G, Vandamme P, De Vuyst L, Vancanneyt M.  Lactobacillus namurensis sp. nov., isolated from a traditional Belgian sourdough. Int J Syst Evol Microbiol. 2007 Feb 57(Pt 2):223-7.

Stephan R, Van Trappen S, Cleenwerck I, Vancanneyt M, De Vos P, Lehner A.  Enterobacter turicensis sp. nov. and Enterobacter helveticus sp. nov., isolated from fruit powder. Int J Syst Evol Microbiol. 2007 Apr 57(Pt 4):820-6.

Švec P., Ševčíková A., Sedláček I., Bednářová J., Snauwaert C., Lefebvre K., Vandamme P., and Vancanneyt M.  2007. Identification of lactic acid bacteria isolated from human blood cultures. FEMS Immunol. Med. Microbiol. 49:192-196.

Thompson FL, Cleenwerck I, Swings J, Matsuyama J, Tetsuya I.  Genomic Diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymorphism (AFLP) and multi locus sequence analysis (MLSA). Microbes Environm. 22: 373-379, 2007.

Van Coillie E, Goris J, Cleenwerck I, Grijspeerdt K, Botteldoorn N, Van Immerseel F, De Buck J, Vancanneyt M, Swings J, Herman L, and Heyndrickx M.  Identification of lactobacilli isolated from the cloaca and vagina of laying hens and characterization for potential use as probiotics to control Salmonella Enteritidis. J Appl Microbiol. 2007 Apr 102(4):1095-106.

Van der Meulen R, Scheirlinck I, Van Schoor A, Huys G, Vancanneyt M, Vandamme P, and De Vuyst L.  Population Dynamics and Metabolite Target Analysis of Lactic Acid Bacteria during Laboratory Fermentations of Wheat and Spelt Sourdoughs. Appl. Envir. Microbiol. 2007 73: 4741-4750.

Vankerckhoven V, Moreillon Ph, Piu S, Giddey M, Huys G, Vancanneyt M, Goossens H, and Entenza JM.  Infectivity of Lactobacillus rhamnosus and Lactobacillus paracasei isolates in a rat model of experimental endocarditis. J. Med. Microbiol., Aug 2007; 56: 1017 - 1024.

 

2006

Dawyndt P, Vancanneyt M, De Baets B, De Vos P. Bioinformatics: how to get more information out of your data. BCCM News, spring.

Dawyndt P, Vancanneyt M, Snauwaert C, De Baets B, De Meyer H, Swings J. Mining fatty acid databases for detection of novel compounds in aerobic bacteria. J Microbiol Methods, 66(3), pp. 410-433, 2006.

de Beer H, Hugo CJ, Jooste PJ, Vancanneyt M, Coenye T, Vandamme P. Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa. Int J Syst Evol Microbiol, 56(6), pp. 1317-1322, 2006.

De Clercq D, Van Trappen S, Cleenwerck I, Ceustermans A, Swings J, Coosemans J, Ryckeboer J. Rhodanobacter spathiphylli sp. nov., a gammaproteobacterium isolated from the roots of Spathiphyllum plants grown in a compost-amended potting mix. Int J Syst Evol Microbiol, 56(8), pp. 1755-1759, 2006.

de Graaf DC, De Vos P, Heyndrickx M, Van Trappen S, Peiren N, Jacobs FJ. Identification of Paenibacillus larvae to the subspecies level: An obstacle for AFB diagnosis. J Invertebr Pathol, 91(2), pp. 115-123, 2006.

Dellaglio F, Vancanneyt M, Endo A, Vandamme P, Felis GE, Castioni A, Fujimoto J, Watanabe K, Okada S. Lactobacillus durianis Leisner et al. 2002 is a later heterotypic synonym of Lactobacillus vaccinostercus Kozaki and Okada 1983. Int J Syst Evol Microbiol, 56(8), pp. 1721-1724, 2006.

Franz CM, Vancanneyt M, Vandemeulebroecke K, De Wachter M, Cleenwerck I, Hoste B, Schillinger U, Holzapfel WH, Swings J. Pediococcus stilesii sp. nov., isolated from maize grains. Int J Syst Evol Microbiol, 56(2), pp. 329-333, 2006.

Huys G, Vancanneyt M, D'Haene K, Vankerckhoven V, Goossens H, Swings J. Accuracy of species identity of commercial bacterial cultures intended for probiotic or nutritional use. Res Microbiol, 2006.

Naser SM, Hagen KE, Vancanneyt M, Cleenwerck I, Swings J, Tompkins TA. Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980). Int J Syst Evol Microbiol, 56(2), pp. 355-360, 2006.

Naser SM, Vancanneyt M, Hoste B, Snauwaert C, Swings J. Lactobacillus cypricasei Lawson et al. 2001 is a later heterotypic synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000. Int J Syst Evol Microbiol, 56(7), pp. 1681-1683, 2006.

Naser SM, Vancanneyt M, Hoste B, Snauwaert C, Vandemeulebroecke K, Swings J. Reclassification of Enterococcus flavescens Pompei et al. 1992 as a later synonym of Enterococcus casseliflavus (ex Vaughan et al. 1979) Collins et al. 1984 and Enterococcus saccharominimus Vancanneyt et al. 2004 as a later synonym of Enterococcus italicus Fortina et al. 2004. Int J Syst Evol Microbiol, 56(2), pp. 413-416, 2006.

Nedashkovskaya OI, Kim SB, Vancanneyt M, Lysenko AM, Shin DS, Park MS, Lee KH, Jung WJ, Kalinovskaya NI, Mikhailov VV, Bae KS, Swings J. Echinicola pacifica gen. nov., sp. nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol, 56(5), pp. 953-958, 2006.

Nedashkovskaya OI, Kim SB, Vancanneyt M, Shin DS, Lysenko AM, Shevchenko LS, Krasokhin VB, Mikhailov VV, Swings J, Bae KS. Salegentibacter agarivorans sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the sponge Artemisina sp. Int J Syst Evol Microbiol, 56(4), pp. 883-887, 2006.

Nedashkovskaya OI, Kim SB, Vancanneyt M, Snauwaert C, Lysenko AM, Rohde M, Frolova GM, Zhukova NV, Mikhailov VV, Bae KS, Oh HW, Swings J. Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa. Int J Syst Evol Microbiol, 56(1), pp. 161-167, 2006.

Nedashkovskaya OI, Vancanneyt M, Christiaens L, Kalinovskaya NI, Mikhailov VV, Swings J. Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina. Int J Syst Evol Microbiol, 56(9), pp. 2037-2041, 2006.

Nedashkovskaya OI, Vancanneyt M, Cleenwerck I, Snauwaert C, Kim SB, Lysenko AM, Shevchenko LS, Lee KH, Park MS, Frolova GM, Mikhailov VV, Bae KS, Swings J. Arenibacter palladensis sp. nov., a novel marine bacterium isolated fromthe green alga Ulva fenestrata, and emended description of the genus Arenibacter. Int J Syst Evol Microbiol, 56(1), pp. 155-160, 2006.

Silva LR, Cleenwerck I, Rivas R, Swings J, Trujillo ME, Willems A, Velazquez E. Acetobacter oeni sp. nov., isolated from spoiled red wine. Int J Syst Evol Microbiol, 56(1), pp. 21-24, 2006.

Svec P, Vancanneyt M, Sedlacek I, Naser SM, Snauwaert C, Lefebvre K, Hoste B, Swings J. Enterococcus silesiacus sp. nov. and Enterococcus termitis sp. nov. Int J Syst Evol Microbiol, 56(3), pp. 577-581, 2006.

Thompson FL, Barash Y, Sawabe T, Sharon G, Swings J, Rosenberg E. Thalassomonas loyana sp. nov., a causative agent of the white plague-like disease of corals on the Eilat coral reef. Int J Syst Evol Microbiol, 56(2), pp. 365-368, 2006.

Vancanneyt M, Naser SM, Engelbeen K, De Wachter M, Van der Meulen R, Cleenwerck I, Hoste B, De Vuyst L, Swings J. Reclassification of Lactobacillus brevis strains LMG 11494 and LMG 11984 as Lactobacillus parabrevis sp. nov. Int J Syst Evol Microbiol, 56(7), pp. 1553-1557, 2006.

Vancanneyt M, Nedashkovskaya OI, Snauwaert C, Mortier S, Vandemeulebroecke K, Hoste B, Dawyndt P, Frolova GM, Janssens D, Swings J. Larkinella insperata gen. nov., sp. nov., a bacterium of the phylum 'Bacteroidetes' isolated from water of a steam generator. Int J Syst Evol Microbiol, 56(1), pp. 237-241, 2006.

Vancanneyt M, Zamfir M, De Wachter M, Cleenwerck I, Hoste B, Rossi F, Dellaglio F, De Vuyst L, Swings J. Reclassification of Leuconostoc argentinum as a later synonym of Leuconostoc lactis. Int J Syst Evol Microbiol, 56(1), pp. 213-216, 2006.

Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel A. Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid. Int J Syst Evol Microbiol, 56(6), pp. 1305-1310, 2006.

Zamfir M, Vancanneyt M, Makras L, Vaningelgem F, Lefebvre K, Pot B, Swings J, De Vuyst L. Biodiversity of lactic acid bacteria in Romanian dairy products. Syst Appl Microbiol, 29(6), pp. 487-495, 2006.

 

2005

Austin B, Austin D, Sutherland R, Thompson F, Swings J. Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environ Microbiol, 7(9), pp. 1488-1495, 2005.

Bernardet JF, Vancanneyt M, Matte-Tailliez O, Grisez L, Tailliez P, Bizet C, Nowakowski M, Kerouault B, Swings J. Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals. Syst Appl Microbiol, 28(7), pp. 640-660, 2005.

Dawyndt P, Thompson FL, Austin B, Swings J, Koski T, Gyllenberg M. Application of sliding-window discretization and minimization of stochastic complexity for the analysis of fAFLP genotyping fingerprint patterns of Vibrionaceae. Int J Syst Evol Microbiol, 55(1), pp. 57-66, 2005.

Dawyndt P, Vancanneyt M, De Meyer H, Swings J. Knowledge Accumulation and Resolution of Data Inconsistencies during the Integration of Microbial Information Sources. IEEE Transactions on Knowledge and Data Engineering, 17(8), pp. 1111-1126, 2005.

de Beer H, Hugo CJ, Jooste PJ, Willems A, Vancanneyt M, Coenye T, Vandamme PA. Chryseobacterium vrystaatense sp. nov., isolated from raw chicken in a chicken-processing plant. Int J Syst Evol Microbiol, 55(5), pp. 2149-2153, 2005.

Dellaglio F, Cleenwerck I, Felis GE, Engelbeen K, Janssens D, Marzotto M. Description of Gluconacetobacter swingsii sp. nov. and Gluconacetobacter rhaeticus sp. nov., isolated from Italian apple fruit.Int J Syst Evol Microbiol, 55(6), pp.2365-70, 2005.

Devriese LA, Vancanneyt M, Baele M, Vaneechoutte M, De Graef E, Snauwaert C, Cleenwerck I, Dawyndt P, Swings J, Decostere A, Haesebrouck F. Staphylococcus pseudintermedius sp. nov., a coagulase-positive species from animals. Int J Syst Evol Microbiol, 55(4), pp. 1569-1573, 2005.

Gelsomino R, Vancanneyt M, Snauwaert C, Vandemeulebroecke K, Hoste B, Cogan TM, Swings J. Corynebacterium mooreparkense, a later heterotypic synonym of Corynebacterium variabile. Int J Syst Evol Microbiol, 55(3), pp. 1129-1131, 2005.

Graef EM, Devriese LA, Baele M, Vancanneyt M, Swings J, Haesebrouck F, Decostere A. Identification of enterococcal, streptococcal and Weissella species in the faecal flora of individually owned dogs. J Appl Microbiol, 99(2), pp. 348-353, 2005.

He L, Li W, Huang Y, Wang L, Liu Z, Lanoot B, Vancanneyt M, Swings J. Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol, 55(5), pp. 1939-1944, 2005.

Jones M, Kusumoto A, Seto S, Jaffe JD, Miyata M, Dawyndt P, Thompson FL, Austin B, Swings J, Koski T, Gyllenberg M, Brook I, Gober AE, Kobayashi A, Satoh A, Ironside JW, Mohri S, Kitamoto T. Hot of the Press. 2005.

Klare I, Konstabel C, Muller-Bertling S, Reissbrodt R, Huys G, Vancanneyt M, Swings J, Goossens H, Witte W. Evaluation of New Broth Media for Microdilution Antibiotic Susceptibility Testing of Lactobacilli, Pediococci, Lactococci, and Bifidobacteria. Appl Environ Microbiol, 71(12), pp. 8982-8986, 2005.

Lanoot B, Vancanneyt M, Hoste B, Cnockaert MC, Piecq M, Gossele F, Swings J. Phenotypic and genotypic characterization of mutants of the virginiamycin producing strain 899 and its relatedness to the type strain of Streptomyces virginiae. Syst Appl Microbiol, 28(1), pp. 77-84, 2005.

Lanoot B, Vancanneyt M, Hoste B, Vandemeulebroecke K, Cnockaert MC, Dawyndt P, Liu Z, Huang Y, Swings J. Grouping of streptomycetes using 16S-ITS RFLP fingerprinting. Res Microbiol, 156(5-6), pp. 755-762, 2005.

Lanoot B, Vancanneyt M, Van Schoor A, Liu Z, Swings J. Reclassification of Streptomyces nigrifaciens as a later synonym of Streptomyces flavovirens; Streptomyces citreofluorescens, Streptomyces chrysomallus subsp. chrysomallus and Streptomyces fluorescens as later synonyms of Streptomyces anulatus; Streptomyces chibaensis as a later synonym of Streptomyces corchorusii; Streptomyces flaviscleroticus as a later synonym of Streptomyces minutiscleroticus; and Streptomyces lipmanii, Streptomyces griseus subsp. alpha, Streptomyces griseus subsp. cretosus and Streptomyces willmorei as later synonyms of Streptomyces microflavus. Int J Syst Evol Microbiol, 55(2), pp. 729-731, 2005.

Laursen BG, Bay L, Cleenwerck I, Vancanneyt M, Swings J, Dalgaard P, Leisner JJ. Carnobacterium divergens and Carnobacterium maltaromaticum as spoilers or protective cultures in meat and seafood: phenotypic and genotypic characterization. Syst Appl Microbiol, 28(2), pp. 151-164, 2005.

Lee M, Kim MK, Vancanneyt M, Swings J, Kim SH, Kang MS, Lee ST. Tetragenococcus koreensis sp. nov., a novel rhamnolipid-producing bacterium. Int J Syst Evol Microbiol, 55(4), pp. 1409-1413, 2005.

Leisner JJ, Vancanneyt M, Van der Meulen R, Lefebvre K, Engelbeen K, Hoste B, Laursen BG, Bay L, Rusul G, De Vuyst L, Swings J. Leuconostoc durionis sp. nov., a heterofermenter with no detectable gas production from glucose. Int J Syst Evol Microbiol, 55(3), pp. 1267-1270, 2005.

Moens T, dos Santos GAP, Thompson F, Swings J, Fonseca-Genevois V, Vincx M, De Mesel I. Do nematode mucus secretions affect bacterial growth? AQUATIC MICROBIAL ECOLOGY, 40(1), pp. 77-83, 2005.

Mounier J, Gelsomino R, Goerges S, Vancanneyt M, Vandemeulebroecke K, Hoste B, Scherer S, Swings J, Fitzgerald GF, Cogan TM. Surface microflora of four smear-ripened cheeses. Appl Environ Microbiol, 71(11), pp. 6489-6500, 2005.

Muthukumarasamy R, Cleenwerck I, Revathi G, Vadivelu M, Janssens D, Hoste B, Gum KU, Park KD, Son CY, Sa T, Caballero-Mellado J. Natural association of Gluconacetobacter diazotrophicus and diazotrophic Acetobacter peroxydans with wetland rice. Syst Appl Microbiol, 28(3):277-86, 2005

Naser S, Thompson FL, Hoste B, Gevers D, Vandemeulebroecke K, Cleenwerck I, Thompson CC, Vancanneyt M, Swings J. Phylogeny and identification of Enterococci by atpA gene sequence analysis. J Clin Microbiol, 43(5), pp. 2224-2230, 2005.

Naser SM, Thompson FL, Hoste B, Gevers D, Dawyndt P, Vancanneyt M, Swings J. Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology, 151(7), pp. 2141-2150, 2005.

Naser SM, Vancanneyt M, De Graef E, Devriese LA, Snauwaert C, Lefebvre K, Hoste B, Svec P, Decostere A, Haesebrouck F, Swings J. Enterococcus canintestini sp. nov., from faecal samples of healthy dogs. Int J Syst Evol Microbiol, 55(5), pp. 2177-2182, 2005.

Nedashkovskaya OI, Kim SB, Han SK, Snauwaert C, Vancanneyt M, Swings J, Kim KO, Lysenko AM, Rohde M, Frolova GM, Mikhailov VV, Bae KS. Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol, 55(1), pp. 49-55, 2005.

Nedashkovskaya OI, Vancanneyt M, Dawyndt P, Engelbeen K, Vandemeulebroecke K, Cleenwerck I, Hoste B, Mergaert J, Tan TL, Frolova GM, Mikhailov VV, Swings J. Reclassification of [Cytophaga] marinoflava Reichenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov. and description of Leeuwenhoekiella aequorea sp. nov. Int J Syst Evol Microbiol, 55(3), pp. 1033-1038, 2005.

Ouadghiri M, Amar M, Vancanneyt M, Swings J. Biodiversity of lactic acid bacteria in Moroccan soft white cheese (Jben). FEMS Microbiol Lett, 251(2), pp. 267-271, 2005.

Pantucek R, Sedlacek I, Petras P, Koukalova D, Svec P, Stetina V, Vancanneyt M, Chrastinova L, Vokurkova J, Ruzickova V, Doskar J, Swings J, Hajek V. Staphylococcus simiae sp. nov., isolated from South American squirrel monkeys. Int J Syst Evol Microbiol, 55(5), pp. 1953-1958, 2005.

Peix A, Rivas R, Trujillo ME, Vancanneyt M, Velazquez E, Willems A. Reclassification of Agrobacterium ferrugineum LMG 128 as Hoeflea marina gen. nov., sp. nov. Int J Syst Evol Microbiol, 55(3), pp. 1163-1166, 2005.

Roux FL, Goubet A, Thompson FL, Faury N, Gay M, Swings J, Saulnier D. Vibrio gigantis sp. nov., isolated from the haemolymph of cultured oysters (Crassostrea gigas). Int J Syst Evol Microbiol, 55(6), pp. 2251-2255, 2005.

Svec P, Vancanneyt M, Devriese LA, Naser SM, Snauwaert C, Lefebvre K, Hoste B, Swings J. Enterococcus aquimarinus sp. nov., isolated from sea water. Int J Syst Evol Microbiol, 55(5), pp. 2183-2187, 2005.

Svec P, Vancanneyt M, Koort J, Naser SM, Hoste B, Vihavainen E, Vandamme P, Swings J, Bjorkroth J. Enterococcus devriesei sp. nov., associated with animal sources. Int J Syst Evol Microbiol, 55(6), pp. 2479-2484, 2005.

Svec P, Vancanneyt M, Seman M, Snauwaert C, Lefebvre K, Sedlacek I, Swings J. Evaluation of (GTG)5-PCR for identification of Enterococcus spp. FEMS Microbiol Lett, 247(1), pp. 59-63, 2005.

Thompson FL, Gevers D, Thompson CC, Dawyndt P, Naser S, Hoste B, Munn CB, Swings J. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol, 71(9), pp. 5107-5115, 2005.

Thompson FL, Thompson CC, Naser S, Hoste B, Vandemeulebroecke K, Munn C, Bourne D, Swings J. Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching. Int J Syst Evol Microbiol, 55(2), pp. 913-917, 2005.

Van Trappen S, Tan TL, Samyn E, Vandamme P. Alcaligenes aquatilis sp. nov., a novel bacterium from sediments of the Weser Estuary, Germany, and a salt marsh on Shem Creek in Charleston Harbor, USA. Int J Syst Evol Microbiol, 55(6), pp. 2571-2575, 2005.

Van Trappen S, Vandecandelaere I, Mergaert J, Swings J. Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol, 55(2), pp. 769-772, 2005.

Vancanneyt M, Engelbeen K, De Wachter M, Vandemeulebroecke K, Cleenwerck I, Swings J. Reclassification of Lactobacillus ferintoshensis as a later heterotypic synonym of Lactobacillus parabuchneri. Int J Syst Evol Microbiol, 55(5), pp. 2195-2198, 2005.

Vancanneyt M, Neysens P, De Wachter M, Engelbeen K, Snauwaert C, Cleenwerck I, Van der Meulen R, Hoste B, Tsakalidou E, De Vuyst L, Swings J. Lactobacillus acidifarinae sp. nov. and Lactobacillus zymae sp. nov., from wheat sourdoughs. Int J Syst Evol Microbiol, 55(2), pp. 615-620, 2005.

Yousif NM, Dawyndt P, Abriouel H, Wijaya A, Schillinger U, Vancanneyt M, Swings J, Dirar HA, Holzapfel WH, Franz CM. Molecular characterization, technological properties and safety aspects of enterococci from 'Hussuwa', an African fermented sorghum product. J Appl Microbiol, 98(1), pp. 216-228, BLACKWELL PUBLISHING LTD, 2005.

 

2004

Abraham WR, Strompl C, Vancanneyt M, Bennasar A, Swings J, Lunsdorf H, Smit J, Moore ER. Woodsholea maritima gen. nov., sp. nov., a marine bacterium with a low diversity of polar lipids. Int J Syst Evol Microbiol, 54(4), pp. 1227-1234, 2004.

Austin B, Dawyndt P, Gyllenberg M, Koski T, Lund T, Swings J, Thompson FL. Sliding window discretization: a new method for multiple band matching of bacterial genotyping fingerprints. Bull Math Biol, 66(6), pp. 1575-1596, 2004.

Carl GD, Leisner JJ, Swings J, Vancanneyt M. Intra-specific variation of Lactobacillus plantarum and Lactobacillus pentosus in sensitivity towards various bacteriocins. Antonie Van Leeuwenhoek, 85(3), pp. 209-216, 2004.

Dawyndt P, Vancanneyt M, Swings J. On the Integration of Microbial Information. Sugawara H (ed.). WFCC Newsletter, 38, pp. 19-34, World Federation for Culture Collections, 2004.

De Graef EM, Devriese LA, Vancanneyt M, Baele M, Collins MD, Lefebvre K, Swings J, Haesebrouck F. Description of Enterococcus canis sp. nov. from dogs and reclassification of Enterococcus porcinus Teixeira et al. 2001 as a junior synonym of Enterococcus villorum Vancanneyt et al. 2001 (vol 53, pg 1069, 2003). Int J Syst Evol Microbiol, 54, pp. 1423-1423, SOC GENERAL MICROBIOLOGY, 2004.

De Vuyst L, Avonts L, Neysens P, Hoste B, Vancanneyt M, Swings J, Callewaert R. The lactobin A and amylovorin L471 encoding genes are identical, and their distribution seems to be restricted to the species Lactobacillus amylovorus that is of interest for cereal fermentations. Int J Food Microbiol, 90(1), pp. 93-106, 2004.

Faury N, Saulnier D, Thompson FL, Gay M, Swings J, Roux FL. Vibrio crassostreae sp. nov., isolated from the haemolymph of oysters (Crassostrea gigas). Int J Syst Evol Microbiol, 54(6), pp. 2137-2140, 2004.

Gelsomino R, Huys G, D'Haene K, Vancanneyt M, Cogan TM, Franz CM, Swings J. Antibiotic resistance and virulence traits of enterococci isolated from Baylough, an Irish artisanal cheese. J Food Prot, 67(9), pp. 1948-1952, 2004.

Gelsomino R, Vancanneyt M, Swings J. Reclassification of Brevibacterium liquefaciens Okabayashi and Masuo 1960 as Arthrobacter nicotianae Giovannozzi-Sermanni 1959. Int J Syst Evol Microbiol, 54(2), pp. 615-616, 2004.

Gelsomino R, Vancanneyt M, Vandekerckhove TM, Swings J. Development of a 16S rRNA primer for the detection of Brevibacterium spp. Lett Appl Microbiol, 38(6), pp. 532-535, 2004.

Gomez-Gil B, Soto-Rodriguez S, Garcia-Gasca A, Roque A, Vazquez-Juarez R, Thompson FL, Swings J. Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms. Microbiology, 150(6), pp. 1769-1777, 2004.

Gomez-Gil B, Thompson FL, Thompson CC, Garcia-Gasca A, Roque A, Swings J. Vibrio hispanicus sp. nov., isolated from Artemia sp. and sea water in Spain. Int J Syst Evol Microbiol, 54(2), p. 629, 2004.

Gomez-Gil B, Thompson FL, Thompson CC, Garcia-Gasca A, Roque A, Swings J. Vibrio hispanicus sp. nov., isolated from Artemia sp. and sea water in Spain. Int J Syst Evol Microbiol, 54(Pt 1), pp. 261-265, 2004.

Huang Y, Li W, Wang L, Lanoot B, Vancanneyt M, Rodriguez C, Liu Z, Swings J, Goodfellow M. Streptomyces glauciniger sp. nov., a novel mesophilic streptomycete isolated from soil in south China. Int J Syst Evol Microbiol, 54(6), pp. 2085-2089, 2004.

Klare, I., Konstabel, C., Reissbrodt, R., Müller-Bertling, S., Huys, G., Vancanneyt, M., Swings, J., Goossens, H., Witte, W. Standardized microdilution test with newly developed LSM broth media for antibiotic susceptibility testing of lactobacilli, lactococci, pediococci, and bifidobacteria. Int. J. Med. Microbiol. 294, 215, 2004

Lanoot B, Vancanneyt M, Dawyndt P, Cnockaert M, Zhang J, Huang Y, Liu Z, Swings J. BOX-pCR fingerprinting as a powerful tool to reveal synonymous names in the genus Streptomyces. Emended descriptions are proposed for the species Streptomyces cinereorectus, S. fradiae, S. tricolor, S. colombiensis, S. filamentosus, S. vinaceus and S. phaeopurpureus. Syst Appl Microbiol, 27(1), pp. 84-92, 2004.

Nedashkovskaya OI, Suzuki M, Lysenko AM, Snauwaert C, Vancanneyt M, Swings J, Vysotskii MV, Mikhailov VV. Cellulophaga pacifica sp. nov. Int J Syst Evol Microbiol, 54(2), pp. 609-613, 2004.

Nedashkovskaya OI, Suzuki M, Vancanneyt M, Cleenwerck I, Lysenko AM, Mikhailov VV, Swings J. Zobellia amurskyensis sp. nov., Zobellia laminariae sp. nov. and Zobellia russellii sp. nov., novel marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol, 54(5), pp. 1643-1648, 2004.

Nedashkovskaya OI, Suzuki M, Vancanneyt M, Cleenwerck I, Zhukova NV, Vysotskii MV, Mikhailov VV, Swings J. Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus. Int J Syst Evol Microbiol, 54(4), pp. 1107-1110, 2004.

Nedashkovskaya OI, Vancanneyt M, Van Trappen S, Vandemeulebroecke K, Lysenko AM, Rohde M, Falsen E, Frolova GM, Mikhailov VV, Swings J. Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol, 54(5), pp. 1757-1764, 2004.

Sawabe T, Hayashi K, Moriwaki J, Fukui Y, Thompson FL, Swings J, Christen R. Vibrio neonatus sp. nov. and Vibrio ezurae sp. nov. isolated from the gut of Japanese abalones. Syst Appl Microbiol, 27(5), pp. 527-534, 2004.

Sawabe T, Hayashi K, Moriwaki J, Thompson FL, Swings J, Potin P, Christen R, Ezura Y. Vibrio gallicus sp. nov., isolated from the gut of the French abalone Haliotis tuberculata. Int J Syst Evol Microbiol, 54(3), pp. 843-846, 2004.

Svec P, Vancanneyt M, Sedlacek I, Engelbeen K, Stetina V, Swings J, Petras P. Reclassification of Staphylococcus pulvereri Zakrzewska-Czerwinska et al. 1995 as a later synonym of Staphylococcus vitulinus Webster et al. 1994. Int J Syst Evol Microbiol, 54(6), pp. 2213-2215, 2004.

Thompson CC, Thompson FL, Vandemeulebroecke K, Hoste B, Dawyndt P, Swings J. Use of recA as an alternative phylogenetic marker in the family Vibrionaceae. Int J Syst Evol Microbiol, 54(3), pp. 919-924, 2004.

Thompson FL, Iida T, Swings J. Biodiversity of vibrios. Microbiol Mol Biol Rev, 68(3), pp. 403-31, table of contents, 2004.

Vanbroekhoven K, Ryngaert A, Bastiaens L, Wattiau P, Vancanneyt M, Swings J, De Mot R, Springael D. Streptomycin as a selective agent to facilitate recovery and isolation of introduced and indigenous Sphingomonas from environmental samples. Environ Microbiol, 6(11), pp. 1123-1136, 2004.

Vancanneyt M, Devriese LA, De Graef EM, Baele M, Lefebvre K, Snauwaert C, Vandamme P, Swings J, Haesebrouck F. Streptococcus minor sp. nov., from faecal samples and tonsils of domestic animals. Int J Syst Evol Microbiol, 54(2), pp. 449-452, 2004.

Vancanneyt M, Mengaud J, Cleenwerck I, Vanhonacker K, Hoste B, Dawyndt P, Degivry MC, Ringuet D, Janssens D, Swings J. Reclassification of Lactobacillus kefirgranum Takizawa et al. 1994 as Lactobacillus kefiranofaciens subsp. kefirgranum subsp. nov. and emended description of L. kefiranofaciens Fujisawa et al. 1988. Int J Syst Evol Microbiol, 54(2), pp. 551-556, 2004.

Vancanneyt M, Zamfir M, Devriese LA, Lefebvre K, Engelbeen K, Vandemeulebroecke K, Amar M, De Vuyst L, Haesebrouck F, Swings J. Enterococcus saccharominimus sp. nov., from dairy products. Int J Syst Evol Microbiol, 54(6), pp. 2175-2179, 2004.

Vaningelgem F, Zamfir M, Mozzi F, Adriany T, Vancanneyt M, Swings J, De Vuyst L. Biodiversity of Exopolysaccharides Produced by Streptococcus thermophilus Strains Is Reflected in Their Production and Their Molecular and Functional Characteristics. Appl Environ Microbiol, 70(2), pp. 900-912, 2004.

Vankerckhoven V, Van Autgaerden T, Huys G, Vancanneyt M, Swings J and Goossens H. Establishment of the PROSAFE collection of probiotic and human lactic acid bacteria. Microbial Ecology in health and disease, 16, pp. 131-136, Taylor & Francis, 2004.

Yansanjav A, Siegumfeldt H, Jespersen L, Vancanneyt M, Swings J, Hollerova I I, Leisner JJ. Detection of resistance of lactic acid bacteria to a mixture of the hop analogue compounds tetrahydroiso-alpha-acids by noninvasive measurement of intracellular pH. J Appl Microbiol, 96(6), pp. 1324-1332, 2004.