Last data update: 24 January 2024 16:39 CET
Plasmid name: pAS2.1mBIDG94E (LMBP 4765)
| New search | Print data sheet |
| Price category: | Cat. 1 (cf. price list) |
| Status: | GeneCorner core plasmid |
| GeneCorner sequence: | p4765.gb (View with Genome Compiler) |
| Sequence analysis results Genecorner: |
- |
| Cloned DNA: |
Mouse BH3 interacting domain death agonist (BID); mutated sequence Saccharomyces cerevisiae GAL4 DNA-binding domain (GALbd) |
| Promoter: | Saccharomyces cerevisiae alcohol dehydrogenase promoter (ADH1) Escherichia coli lac operon promoter |
| Ribosome binding site: |
- |
| Terminator: | Saccharomyces cerevisiae alcohol dehydrogenase terminator (ADH1) Saccharomyces cerevisiae iso-1-cytochrome C terminator (CYC1) Saccharomyces cerevisiae 2 micron plasmid (2μ) FLP terminator |
| Selection marker: | Ampicillin (amp) Cycloheximide (CYH2) TRP1; auxotrophic |
| Replicon: | Escherichia coli plasmid pMB1 origin Phage f1 origin Saccharomyces cerevisiae 2 micron plasmid origin (2μ); incl. region conferring stability (STB) |
| Host range: | Escherichia coli Saccharomyces cerevisiae; trp1(-) |
| Parental clone: | pAS2.1; pAS2mBID |
| Further information: | The plasmid was constructed by inserting a 596 bp NcoI-SalI fragment, containing the mutated sequence of mBID, into the NcoI-SalI opened pAS2.1 vector. As a result, the mutated sequence of mBID is fused in phase to the N-terminal S. cerevisiae GALbd domain. The mutated sequence of mBID was obtained by fusion PCR using pAS2mBID as template. As compared to the wt mBID cDNA, the glycine (G) codon at position 94 was replaced by a glutamic acid (E) codon. pAS2.1 was derived from pAS2 by removing the Influenza HA epitope, encoding the haemagglutinin tagging peptide. Therefore, unlike pAS2mBIDG94E, pAS2.1mBIDG94E transformants lack aspecific β-galactosidase activity. The S. cerevisiae GALbd is composed of the first 147 codons from GAL4, containing the nuclear localization signal. The GALbd-mBIDG94E fusion protein can be used as a bait protein in two-hybrid screening. pAS2.1mBIDG94E carries the S. cerevisiae tryptophan 1 coding sequence and the CYH2 sequence encoding ribosomal protein L29 for dominant cycloheximide sensitivity which facilitates the elimination of false positives. When cloning a fragment downstream from the lac promoter it may be advisable to use lacI(q) strains in order to prevent fortuitous expression of a possibly noxious polypeptide. The nucleotide sequence of the pAS2.1 vector corresponds with the EMBL Nucleotide Sequence Database accession number U30497.1, corresponding to the Clontech website (version 05/01/1996). The nucleotide sequence of the mBID cDNA corresponds with the Genbank accession number NM_007544.2 and adapted to the sequence analysis results of the Department of Biomedical Molecular Biology (Ghent University, Belgium). The following difference is observable: the nucleotide G at position 6023 is substituted by an A- residue, resulting in a Glu/Lys replacement for amino acid 14. Other name of the plasmid is pAS2.1 mBid G94E. |
| EMBL Accession number: | U30497, view at EMBL, GenBank, DDBJ NM_007544.2, view at GenBank |
| Latest sequence update: | 08/02/2005 |
| Sequence detail: | Primers used to amplify mBIDm:
forward primer: 5' CATGCCATGGCG.ATG.GAC.TCT.GAG.GTC.AGC.AAC.GG 3'
NcoI ***
forward primer for fusion PCR: 5' TC.GCC.CAA.ATA.GAG.GAT.GAG.ATG.GA 3'
^^
reverse primer for fusion PCR: 5' TC.CAT.CTC.ATC.CTC.TAT.TTG.GGC.GA 3'
^^
reverse primer: 5' TGCGGTCGAC.TCA.GTC.CAT.CTC.GTT.TCT.AAC.CAA.GTT.C 3'
SalI +++
Nucleotide sequence of the fusion gene:
---------------------- GALbd --------------------->
1 147
5' ... CTGAAAG.ATG.AAG.CTA.CTG.TCT.TCT ... AGA.CAG.TTG.ACT.GTA.TCG.CCG.GTA.TTG.CAA
Met Lys Leu Leu Ser Ser Arg Gln Leu Thr Val Ser Pro Val Leu Gln
*** HindII
----------------------------- mBIDm
1
TAC.CCA.GCT.TTG.ACT.CAT.ATG.GCC.ATG.GCG.ATG.GAC.TCT.GAG.GTC.AGC ... CAA.ATA
Tyr Pro Ala Leu Thr His Met Ala Met Ala Met Asp Ser Glu Val Ser Gln Ile
NdeI NcoI ***
StyI
mBIDm -------------------------------->
94 195
GAG.GAT.GAG ... AGA.AAC.GAG.ATG.GAC.TGA.GTCGACCTGCAGCCAAGC ... 3'
Glu Asp Glu Arg Asn Glu Met Asp +++ SalI PstI
^^ HindII
***: start codon.
^ : mutated nucleotide.
+++: termination codon.
Punctuation indicates reading frame. |
| Authenticity test: | Restriction enzyme pattern analysed at GeneCorner: Alw44I/PstI, Bsp119I, CaiI/XhoI, EcoRI/HindIII, NcoI/SalI and NheI/PdmI. to be tested |
| Class: | Recombinant plasmid |
| Type: | Plasmid |
| History of deposit: | This plasmid was deposited by Prof. Dr P. Vandenabeele(1) (2). (1) Department for Molecular Biomedical Research, VIB, Ghent, Belgium (2) Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium |
| Plasmid reference: | - |
| Restricted distribution: | - BCCM MTA |
| Distributed as: | H/P active culture or plasmid DNA |
| Host for distribution: | Escherichia coli K12 MC1061 |
| Host reference: | Casadaban et al., J. Mol. Biol. 138 (1980), 179-207 [PMID: 6997493] |
| Related host reference: | Brigé et al., Biochem. J. 394 (2006), 335-344 [PMID: 16293111] |
| Cultivation medium: | LB-Lennox + ampicillin (100 μg/ml) |
| Cultivation temperature: | 37°C |
| Biosafety level: | L1 |
| Cultivation remark: | - |
| Other culture collection numbers: | - |
Refer in your Materials and Methods: |
pAS2.1mBIDG94E (LMBP 4765) is available at BCCM/GeneCorner. This plasmid was deposited by Prof. Dr P. Vandenabeele . |
Note: Up-to-date, validated data are enclosed with the biological material. Nevertheless, these data are a snapshot at a given moment; further updates are always possible.