Last data update: 24 January 2024 16:39 CET
Plasmid name: pPIC9-TSE (LMBP 4166)
| New search | Print data sheet |
| Price category: | Cat. 1 (cf. price list) |
| Status: | GeneCorner core plasmid |
| GeneCorner sequence: |
p4166.gb
(View with Genome Compiler) p4166.txt p4166.pdf |
| Sequence analysis results Genecorner: |
- |
| Cloned DNA: |
Saccharomyces cerevisiae α-mating factor 1 gene (MFα1); prepro secretion signal sequence (ppMF) Trypanosoma cruzi trans-sialidase gene (TS); mature sequence E-tag; C-terminal Phage fd gene 3 (g3); fragment |
| Promoter: | Pichia pastoris alcohol oxidase 1 promoter (AOX1) |
| Ribosome binding site: |
- |
| Terminator: | Pichia pastoris alcohol oxidase 1 terminator (AOX1) |
| Selection marker: | Ampicillin (amp) Pichia pastoris HIS4; auxotrophic |
| Replicon: | Escherichia coli plasmid pMB1 origin |
| Host range: | Escherichia coli Pichia pastoris; his4(-), integrative |
| Parental clone: | pCAGGS-TSE; pPIC9-TS |
| Further information: | The plasmid was constructed by exchanging the MluI/NotI (filled in with Klenow DNA polymerase) fragment from pPIC9-TS, containing the C-terminal part of the mature T. cruzi TS gene, by the MluI/ClaI (filled in with Klenow DNA polymerase) fragment from pCAGGS-TSE, containing the C-terminal part of the mature T. cruzi TS gene provided with a C-terminal E-tag. This plasmid is useful in P. pastoris strains for secreted expression of trans-sialidase ligated to an E-tag under control of the strong, highly-inducible P. pastoris AOX1 promoter. At the fusion junction between the S. cerevisiae ppMF and the mature T. cruzi TS gene, a (Glu-Ala)-dipeptide and an additional (but not essential) Tyr-residue are present. During secretion of the protein, the (Glu-Ala)-dipeptide is removed by a dipeptidase. The presence of the P. pastoris HIS4 gene and two P. pastoris AOX1 regions (the AOX1 promoter and the AOX1 3' flanking region) allows integration of the linearized vector into the Pichia genome via homologous recombination at the his4 locus or AOX1 locus respectively. The plasmid contains a modified P. pastoris HIS4 gene: the internal BamHI site is removed. The nucleotide sequence of this plasmid corresponds with the EMBL Nucleotide Sequence Database accession number LT727317.1. The nucleotide sequence of the T. cruzi TS cds corresponds with the EMBL Nucleotide Sequence Database accession number AJ276679.1. The nucleotide sequence of the pPIC9 vector corresponds with the online Invitrogen sequence. Other name of the plasmid is pPIC9-TSjE. |
| EMBL Accession number: | AJ276679.1, view at EMBL, GenBank, DDBJ LT727317.1, view at EMBL, GenBank, DDBJ |
| Latest sequence update: | 17/12/2012 |
| Sequence detail: | Nucleotide sequence around the start of the trans-sialidase gene:
-- ppMF ---> | || || -- mature TS -->
5' ... GGG.GTA.TCT.CTC.GAG.AAA.AGA|GAG.GCT||GAA.GCT||TAC.GTG.CTG.GCA.CCC ... 3'
Gly Val Ser Leu Glu Lys Arg|Glu Ala||Glu Ala||Tyr Val Leu Ala Pro
XhoI | || ||-------
HindIII SnaBI/PmlI
| : Kex2 cleavage site. fusion
||: Dipeptidase cleavage.
Punctuation indicates reading frame.
Nucleotide sequence at the end of the trans-sialidase gene:
-- mature TS --> -- E-tag -->
5' ... AGC.AGC.GAC.ACG.AAG.GAA.TTG.GGT.GCG.CCG ... 3'
Ser Ser Asp Thr Lys Glu Leu Gly Ala Pro
Punctuation indicates reading frame. |
| Authenticity test: | Restriction enzyme pattern analysed at GeneCorner: BglI, Eco47III and NcoI. |
| Class: | Recombinant plasmid |
| Type: | Plasmid |
| History of deposit: | This plasmid was deposited by Prof. Dr N. Callewaert(1) (2). (1) Department for Molecular Biomedical Research, VIB, Ghent, Belgium (2) Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium |
| Plasmid reference: | Laroy et al., Protein Expr. Purif. 20 (2000), 389-393 [PMID: 11087678] |
| Related plasmid reference: | Manual of Pichia Expression (Invitrogen) |
| Restricted distribution: | - BCCM MTA |
| Distributed as: | H/P active culture or plasmid DNA |
| Host for distribution: | Escherichia coli K12 MC1061 |
| Host reference: | Casadaban et al., J. Mol. Biol. 138 (1980), 179-207 [PMID: 6997493] |
| Related host reference: | Brigé et al., Biochem. J. 394 (2006), 335-344 [PMID: 16293111] |
| Cultivation medium: | LB-Lennox + ampicillin (100 μg/ml) |
| Cultivation temperature: | 37°C |
| Biosafety level: | L1 |
| Cultivation remark: | - |
| Other culture collection numbers: | - |
Refer in your Materials and Methods: |
pPIC9-TSE (LMBP 4166) is available at BCCM/GeneCorner. This plasmid was deposited by Prof. Dr N. Callewaert and was published in Laroy et al., 2000. |
Note: Up-to-date, validated data are enclosed with the biological material. Nevertheless, these data are a snapshot at a given moment; further updates are always possible.