Last data update: 24 January 2024 16:39 CET
Plasmid name: pTT3-DrCsf1r-prey (LMBP 11888)
New search | Print data sheet |
Price category: | Cat. 3 (cf. price list) |
Status: | GeneCorner non-core plasmid |
Depositor's sequence: | not available |
Sequence analysis results Genecorner: |
NGS: c05-gc-dec2019.fasta |
Cloned DNA: |
Danio rerio colony stimulating factor 1 receptor a cDNA (csf1ra, csf1r, GeneID 64274); extracellular domain (ECD) Rattus norvegicus Cd4 molecule cDNA (Cd4, GeneID 24932); fragment Rattus norvegicus cartilage oligomeric matrix protein cDNA (Comp, GeneID 25304); fragment |
Promoter: | Human cytomegalovirus immediate early promoter (CMV-IE) and enhancer Escherichia coli lac operon promoter |
Ribosome binding site: |
- |
Terminator: | Rabbit β-globin polyadenylation signal (β-globin polyA) |
Selection marker: | Ampicillin (amp) |
Replicon: | Escherichia coli plasmid pMB1 origin Epstein-Barr virus origin of replication (oriP) |
Host range: | Escherichia coli Mammalian cells |
Parental clone: | unc5bCD4d3+4-blac |
Further information: | The plasmid was constructed by cloning the D. rerio Csf1ra extracellular domain coding sequence into the unc5bCD4d3+4-blac vector for Avidity-based Extracellular Interaction Screening (AVEXIS) assays. This vector expresses the D. rerio Csf1ra, as a prey protein, linked to a tag containing domains 3 and 4 of the rat CD4 (Cd4d3+4) protein, followed by a peptide sequence from the rat cartilage oligomeric matrix protein (Comp) and a C-terminal β-lactamase enzyme. The COMP peptide ensures the prey forms pentamers once expressed. The unc5bCD4d3+4-blac vector was derived from pTT3, obtained from Dr Yves Durocher (National Research Council of Canada, Biotechnology Research Institute). The nucleotide sequence of the D. rerio Csf1ra cDNA corresponds with the EMBL Nucleotide Sequence Database accession number CU458899.1. Other name of the plasmid is csf1r-blac-AVEXIS. |
EMBL Accession number: | CU458899.1, view at EMBL, GenBank, DDBJ |
Latest sequence update: | 02/04/2020 |
Authenticity test: | This plasmid has been fully sequenced but the NGS sequence data still need to be implemented. |
Class: | Recombinant plasmid |
Type: | Plasmid |
History of deposit: | This plasmid was deposited by Dr G. Wright(1). It was constructed by Dr M. Bushell(1). (1) Cell Surface Signalling Laboratory, Wellcome Trust Sanger Institute, Cambridge, UK |
Plasmid reference: | Bushell et al., Genome Res. 18 (2008), 622-630 [PMID: 18296487] [DOI: 10.1101/gr.7187808] |
Related plasmid reference: | Martin et al., Mol. Cell. Proteomics 9 (2010), 2654-2665 [PMID: 20802085] [DOI: 10.1074/mcp.M110.004119] Söllner et al., Genome Biol. 10 (2009), R99 [PMID: 19765300] [DOI: 10.1186/gb-2009-10-9-r99] Gao et al., Cell Rep. 12 (2015), 694-708 [PMID: 26190107] [DOI: 10.1016/j.celrep.2015.06.047] |
Restricted distribution: | - BCCM MTA |
Distributed as: | H/P active culture or plasmid DNA |
Host for distribution: | Escherichia coli K12 DH5αT1R |
Host reference: | - |
Related host reference: | Killmann et al., J. Bacteriol. 178 (1996), 6913-6920 [PMID: 8955314] [DOI: 10.1128/jb.178.23.6913-6920.1996] |
Cultivation medium: | LB-Lennox + ampicillin (100 μg/ml) |
Cultivation temperature: | 37°C |
Biosafety level: | L1 |
Other culture collection numbers: | - |
Refer in your Materials and Methods: |
pTT3-DrCsf1r-prey (LMBP 11888) is available at BCCM/GeneCorner. This plasmid was deposited by Dr G. Wright and was published in Bushell et al., 2008. |
Note: Up-to-date, validated data are enclosed with the biological material. Nevertheless, these data are a snapshot at a given moment; further updates are always possible.