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GeneCorner plasmid details

Last data update: 21 October 2021 10:13 CEST

Plasmid name: pdcDNA-FLAG (LMBP 4704)

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Price category: Cat. 1 (cf. price list)
Status: GeneCorner core plasmid
GeneCorner sequence: p4704.gb (View with Genome Compiler)
p4704.txt
p4704.pdf
Sequence
analysis results
Genecorner:

-

Cloned DNA: B gene of the control of cell death locus of the Escherichia coli F plasmid (ccdB, lethal gene)
FLAG epitope tag; N-terminal
Promoter: Human cytomegalovirus immediate early promoter (CMV-IE) and enhancer
Simian virus 40 early promoter (SV40 early)
Phage T7 gene 10 promoter (T7g10)
Phage SP6 promoter
Escherichia coli lac operon promoter
Escherichia coli lac operon promoter; mutant (lacUV5)
Ribosome
binding site:
-
Terminator: Simian virus 40 polyadenylation signal (SV40 polyA)
Bovine growth hormone polyadenylation signal (BGH polyA)
Selection marker: Ampicillin (amp)
Chloramphenicol (cam)
Neomycin (neo; G418)
Replicon: Escherichia coli plasmid pMB1 origin
Phage f1 origin
Simian virus 40 bidirectional origin (SV40)
Host range: Escherichia coli; use a ccdB-resistant strain for propagation
Mammalian cells; SV40 permissive cells
Parental clone: pcDNA3
Further information: The plasmid was constructed by converting pcDNA3 to a Gateway destination vector as follows: 1) The Gateway reading frame cassette A (rfA, from Invitrogen) was amplified with primers containing a HindIII site, the FLAG tag and an XbaI site. 2) The PCR product and the vector pcDNA3 (Invitrogen) were digested with HindIII and XbaI and ligated together, resulting in pdcDNA-FLAG.
pdcDNA-FLAG is a Gateway destination vector, containing the ccdB gene flanked by the bacteriophage λ attR recombination sites.
pdcDNA-FLAG is designed for fusing a gene of interest to the N-terminal FLAG epitope tag according to the Gateway Cloning Technology (Invitrogen) and for high-level, constitutive, native expression of this gene in mammalian cells under control of the human CMV-IE promoter and enhancer.
A Gateway entry clone, containing the gene of interest flanked by the λ attL recombination sites, recombines with the attR sites of the destination vector, replacing the ccdB gene. Standard E. coli strains with the unreacted destination vector or with the by-product plasmid retaining the ccdB gene will fail to grow. Thus, this negative selection provides high-efficiency recovery of only the desired clones. The chloramphenicol resistance gene located between the two attR sites permits counterselection.
This Gateway destination vector is compatible with the human orfeome library which is also available at BCCM/GeneCorner.
The nucleotide sequence of this plasmid corresponds with the EMBL Nucleotide Sequence Database accession number LT727164.1.
The absence of a second enhancer in the SV40 early promoter was shown by sequence analysis at LMBP.
The region between the ccdB gene and the f1 ori was also sequenced by LMBP.
Other names of the plasmid are pDEST-FLAG and pdcDNAflag.
EMBL Accession number: LT727164.1, view at EMBL, GenBank, DDBJ
Latest sequence update: 09/09/2011
Authenticity test: Restriction enzyme pattern analysed at GeneCorner: EcoRI, HindIII/XbaI, HindIII, NcoI/XmnI, SacI and PvuII.
Class: Recombinant plasmid
Type: Plasmid
History of deposit: This plasmid was deposited by Prof. Dr F. Van Roy(1) (2). It was constructed by Dr B. Janssens(1) (2).
(1) Department for Molecular Biomedical Research, VIB, Ghent, Belgium
(2) Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium
Plasmid reference: -
Related plasmid reference: Funnell et al., Nat Commun 8 (2017), 7 [PMID: 28232751] [DOI: 10.1038/s41467-016-0008-7]
Restricted distribution: - BCCM MTA
Distributed as: H/P active culture or plasmid DNA
Host for distribution: Escherichia coli K12xB DB3.1
Host reference: -
Related host reference: Bernard et al., J. Mol. Biol. 226 (1992), 735-745 [PMID: 1324324]
Cultivation medium: LB-Lennox + ampicillin (100 μg/ml) + chloramphenicol (25 μg/ml)*
Cultivation temperature: 37°C
Biosafety level: L1
Cultivation remark: *: selection of transformants on chloramphenicol; subsequent cultivation of a single colony in liquid medium with ampicillin. This culture grows very slow: take 24 hours into account for saturated growth!
Other culture collection numbers: -

Refer in your Materials and Methods:

pdcDNA-FLAG (LMBP 4704) is available at BCCM/GeneCorner. This plasmid was deposited by Prof. Dr F. Van Roy .

Note: Up-to-date, validated data are enclosed with the biological material. Nevertheless, these data are a snapshot at a given moment; further updates are always possible.

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