Last data update: 24 January 2024 16:39 CET
Plasmid name: pDG1i-mRipk3-HA blast (LMBP 10385)
| New search | Print data sheet |
| Price category: | Cat. 1 (cf. price list) |
| Status: | GeneCorner non-core plasmid |
| Depositor's sequence: | p10385.gb |
| Sequence analysis results Genecorner: |
- |
| Cloned DNA: |
Mouse receptor-interacting serine-threonine kinase 3 cDNA (Ripk3, Rip3, GeneID 56532) Influenza HA epitope encoding the haemagglutinin tagging peptide; C-terminal |
| Promoter: | Human cytomegalovirus immediate early promoter (CMV-IE); minimal promoter with tet responsive element (CMVTRE) Rous sarcoma virus/human immunodeficiency virus hybrid long terminal repeat (RSV/HIV-1 5' LTR) Simian virus 40 early promoter (SV40 early) Escherichia coli lac operon promoter Phage T3 promoter Phage T7 gene 10 promoter (T7g10) Synthetic prokaryotic EM7 promoter |
| Ribosome binding site: |
- |
| Terminator: | Rous sarcoma virus/human immunodeficiency virus hybrid long terminal repeat (RSV/HIV-1 3' LTR); modified HIV-1 3' LTR with deleted U3 region (ΔU3/3' LTR) Simian virus 40 polyadenylation signal (SV40 polyA) |
| Selection marker: | Ampicillin (amp) Blasticidin (bsd) |
| Replicon: | Escherichia coli plasmid pMB1 origin Phage f1 origin Simian virus 40 bidirectional origin (SV40) |
| Host range: | Escherichia coli Mammalian cells; SV40 permissive cells |
| Parental clone: | pDG1i-HA blast; pDONOR 207-mRIP3K |
| Further information: | The plasmid was constructed by inserting the mouse Ripk3 coding sequence into the pDG1i-HA blast vector by Gateway recombination with pDONOR 207-mRIP3K. This is a lentiviral Gateway expression vector, with the tet-inducible minimal human CMV-IE promotor. The U3 region of the HIV-1 3' LTR is deleted (ΔU3 or dU3) and facilitates self-inactivation of the HIV-1 5' LTR after transduction to enhance the biosafety of the vector. The element also contains a polyadenylation signal for transcription termination and polyadenylation of mRNA in transduced cells. The vector contains the psi packaging signal, allowing viral packaging, and the rev response element (RRE) from HIV-1, permitting Rev-dependent nuclear export of unspliced viral mRNA. Because the risk for recombination after each subcultivation is high, this plasmid is only available under the format of isolated plasmid DNA. Plasmid integrity should be checked via PvuII restriction digest after each subcultivation. The nucleotide sequence of the mouse Ripk3 coding sequence corresponds with the Genbank accession number NM_019955.2 except for 2 silent mutations. The nucleotide sequence of the parental pDG1i-HA blast vector corresponds with the EMBL Nucleotide Sequence Database accession LT009439.1. Other names of the plasmid are pDG1 - HA Blast + mRIP3K_FL -stop cl1 and pDG1-HA-blast-RIPK3. |
| EMBL Accession number: | NM_019955.2, view at GenBank LT009439.1, view at EMBL, GenBank, DDBJ |
| Latest sequence update: | 26/07/2017 |
| Authenticity test: | The plasmid still needs to be subjected to the authenticity test. |
| Class: | Recombinant plasmid |
| Type: | Plasmid |
| History of deposit: | The plasmid was deposited by Dr T. L. Aaes(1)(2) and Prof. Dr P. Vandenabeele(1)(2). (1) Center for Inflammation Research, VIB, Ghent, Belgium (2) Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium |
| Plasmid reference: | Aaes et al., Cell Rep. 15 (2016), 274-287 [PMID: 27050509] [DOI: 10.1016/j.celrep.2016.03.037] |
| Restricted distribution: | - BCCM MTA - RECIPIENT agrees to refer to the 'Plasmid reference' in the first publication making use of the MATERIAL. |
| Distributed as: | plasmid DNA |
| Host for distribution: | Escherichia coli K12 DH5α |
| Host reference: | Focus 8 (1986), 9 |
| Related host reference: | Woodcock et al., Nucleic Acids Res. 17 (1989), 3469-3478 [PMID: 2657660] Rodriguez-Quinones et al., Focus 15 (1993), 110-112 Hanahan, J. Mol. Biol. 166 (1983), 557-580 [PMID: 6345791] [DOI: 10.1016/s0022-2836(83)80284-8] Hanahan, in 'DNA Cloning: A Practical Approach Volume I', IRL Press, Oxford (1985), 109-135 [ISSN/ISBN: 0947946187] Grant et al., Proc. Natl. Acad. Sci. U.S.A. 87 (1990), 4645-4649 [PMID: 2162051] |
| Cultivation medium: | LB-Lennox + ampicillin (100 μg/ml) |
| Cultivation temperature: | 28°C |
| Biosafety level: | L1 in E. coli; L2 in mammalian cells |
| Other culture collection numbers: | - |
Refer in your Materials and Methods: |
pDG1i-mRipk3-HA blast (LMBP 10385) is available at BCCM/GeneCorner. The plasmid was deposited by Dr T. L. Aaes and Prof. Dr P. Vandenabeele and was published in Aaes et al., 2016. |
Note: Up-to-date, validated data are enclosed with the biological material. Nevertheless, these data are a snapshot at a given moment; further updates are always possible.